UFO06965.5prime Sequence
1108 bp (981 high quality bases) assembled on 2009-08-31
> UFO06965.5prime
CAGTCGACATGGCGCCCAAGGCAGCAGCTGTCAACATCAAGCCAACGGCC
AAGGCCTTCAAGGACAAGTCGAAGCCCACCGATGTGCGTTTGTCCAACAT
CCAGGCGGCCAAAGCCGTTTCCGATGCTATCCGCACCAGTTTGGGCCCCC
GCGGCATGGACAAGATGATCCAGGCCGGCAACGGCGAGGTGTCCATCACC
AACGATGGCGCCACCATCCTGAAGCAGATGAATGTACTGCACCCGGCTGC
CAAGATGCTGGTGGAGCTGTCGCGTGCCCAGGATGTGGCCGCTGGTGACG
GCACCACCTCCGTGGTTGTCATTGCCGGAGCTCTGCTTGAGGCGTGCGAG
AAGTTGCTGCAGAAGGGTCTGCATCCCACGGCCATTTCGGACTCGTTCCA
GCGCTGCTCGAACAAGGCCGTCGAGATTCTTAAACAGATGTCCACTCCCA
TCGAGCTGGACGACCGCGAGACGCTGATCAAGAGCGCCTCCACCTCGTTG
AACTCCAAGGTGGTGTCGCAGCAGAGCAGCCTGCTGGCCCCCATTGCCGT
GGATGCCGTGCTGAAGGTTACGGATCCCGGCAAGGAAACCTCTGTGGATC
TCAAGAACATCAAGGTCATCTCCAGCCTGGGTGGCACTGTTGAGGACACC
GAGCTGGTCGATGGATTGGTCTTCACCTGCCGCTCTGCCGGATCCAACGC
TCCCAAGCGCATTGAGAAGGCCAAGATCGGTCTTATCCAGTTCTGCATTT
CGGCCCCCAAGACCGATATGGATCACAATGTGATTGTATCGGATTACGCT
GCCATGGATCGTGTGCTCAAGGAGGAGCGTTCATACATCCTGAACATTGT
CAAGCAGATCAAGAAGTCAGGATGCAATGTTCTTCTCGTTCAGAAGTCTA
TCTTGCGCGATGCTGTCTCTGATCTGGCTCAGCATTTCCTGACAGATCAG
TGCATGGTCGTTAAGGATGTGGAGCGCGAGGATATTGAGTTCGTGGTGCA
GACCCTGCACTGCGACGATCGCTTCGTGATCACTTCCAGCGAAACTTCAT
GCGATCTTGGTCGAGAAGGGTGCAATGTACACAGTTGTGAGATTACGGCA
TCGACTGG
UFO06965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5525-RA | 1916 | CG5525-RA | 113..1147 | 9..1036 | 4955 | 99.1 | Plus |
| Tcp-1eta-RA | 1964 | CG8351-RA | 223..353 | 135..265 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12691565..12692219 | 767..113 | 3275 | 100 | Minus |
| 2L | 23513712 | 2L | 12691363..12691502 | 907..768 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 12692717..12692822 | 114..9 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 12691195..12691304 | 1013..907 | 345 | 91.8 | Minus |
| 3R | 32079331 | 3R | 8801964..8802094 | 135..265 | 205 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:51 has no hits.
UFO06965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:23 Download gff for
UFO06965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 116..1162 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:29 Download gff for
UFO06965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 113..1159 | 9..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:53 Download gff for
UFO06965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5525-RA | 113..1159 | 9..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:53 Download gff for
UFO06965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12691156..12691303 | 908..1045 | 91 | <- | Minus |
| 2L | 12691363..12691502 | 768..907 | 100 | <- | Minus |
| 2L | 12691565..12692217 | 115..767 | 100 | <- | Minus |
| 2L | 12692717..12692822 | 9..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:29 Download gff for
UFO06965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12691156..12691303 | 908..1045 | 91 | <- | Minus |
| arm_2L | 12691363..12691502 | 768..907 | 100 | <- | Minus |
| arm_2L | 12691565..12692217 | 115..767 | 100 | <- | Minus |
| arm_2L | 12692717..12692822 | 9..114 | 100 | | Minus |
