UFO06968.5prime Sequence
1079 bp (976 high quality bases) assembled on 2009-08-31
> UFO06968.5prime
CAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCTTTGCTCTG
GTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACTTGCGAAGA
TAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCCCTGTCCGG
AAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACCGCTTCACG
ATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTGGTGGCCAG
CTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCTTACCATGG
ACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCGGAGTCACC
CAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCGCTGAGTCC
ATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAAACGTTGCT
GCTTCACCATCGACATCAAGGTGGTGCGCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAACGGGGGCGAGAGTTGTCCATATTGCCACGTTTAAATC
AAACTGTGAACTCACCCAGGATTGGCTGAACGAAAACATATCTCAATAAA
CCCTTTAGAAATAGCAGTTTTCACGTACACGCCACATCTGCGAATATATG
TGTAGAACTGCGAAATCGTCTTGTATTCACTTCGAGCGATGAAACGTCAG
TGGCTCATGGAACGGTTACAGGGAACAAT
UFO06968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2h-RC | 597 | CG11315-RC | 30..501 | 8..479 | 2360 | 100 | Plus |
| Npc2h-RA | 812 | CG11315-RA | 30..501 | 8..479 | 2360 | 100 | Plus |
| Npc2h-RB | 731 | CG11315-RB | 30..338 | 8..316 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30745790..30746261 | 479..8 | 2360 | 100 | Minus |
| 3R | 32079331 | 3R | 30744757..30745180 | 479..56 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:05 has no hits.
UFO06968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:21 Download gff for
UFO06968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11315-RA | 20..506 | 1..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:09 Download gff for
UFO06968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2h-RA | 20..506 | 1..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:18 Download gff for
UFO06968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2h-RA | 22..508 | 1..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:18 Download gff for
UFO06968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30745790..30746264 | 1..479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:09 Download gff for
UFO06968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26571512..26571986 | 1..479 | 99 | | Minus |
