UFO06969.5prime Sequence
1071 bp (981 high quality bases) assembled on 2009-08-31
> UFO06969.5prime
CAGTCGACATGAAGAACGCTGTTGCTATTCTGCTGTGCGCCCTGCTGGGT
CTGGCCTCTGCCTCCGACTACAAGCTGCGCACCGCCGAGGATCTGCAGAG
CGCGCGCAAGGAGTGTGCCGCCAGCAGCAAGGTGACCGAGGCCCTGATCG
CCAAGTACAAGACCTTCGACTATCCCGACGATGACATCACCCGCAACTAC
ATCCAGTGCATCTTCGTCAAATTCGACCTGTTCGATGAGGCCAAGGGCTT
CAAGGTGGAGAACCTGGTGGCGCAACTGGGCCAGGGCAAGGAGGACAAGG
CCGCGCTGAAGGCCGACATCGAGAAGTGCGCCGACAAGAACGAGCAGAAG
TCGCCCGCCAACGAATGGGCCTTCCGTGGCTTCAAGTGTTTCCTTGGCAA
GAACCTGCCCCTCGTGCAGGCCGCCGTCCAGAAGAACGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATCTCAATAAACCCTTTAGGAAATAGGCAGTTTTCACGTAACAC
GCCACATCTTGCGAATATATGTTGTAGAACTGCCGAATCGTCTTGTATTC
ACTCCGAGCGATGAAACGTTCAGTTGCTCATGGAACGTGTAACAGGGTGA
ACCTTCCCATTACCAGCTCAC
UFO06969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp44a-RB | 1076 | CG2297-RB | 304..733 | 8..437 | 2150 | 100 | Plus |
| Obp44a-RA | 648 | CG2297-RA | 76..505 | 8..437 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8134513..8134897 | 437..53 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 8134966..8135012 | 54..8 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:42 has no hits.
UFO06969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:20 Download gff for
UFO06969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 73..509 | 1..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:21 Download gff for
UFO06969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 69..505 | 1..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:47 Download gff for
UFO06969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 69..505 | 1..437 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:47 Download gff for
UFO06969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8134513..8134896 | 54..437 | 100 | <- | Minus |
| 2R | 8134967..8135015 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:21 Download gff for
UFO06969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4022018..4022401 | 54..437 | 100 | <- | Minus |
| arm_2R | 4022472..4022520 | 1..53 | 92 | | Minus |
