UFO06972.5prime Sequence
1058 bp (952 high quality bases) assembled on 2009-08-31
> UFO06972.5prime
CAGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGGCGAAGTTC
GCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAATGCCCTGCA
CCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCAAATGATCA
TCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGTTGCACTTT
TACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTCTACGCGAA
CATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGGCTATGAGC
CCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTATTTCCCGC
TACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTGCACTATCT
CTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGACGAAGTAC
GTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACTACCGACCA
TCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGACGAGCTGGA
GGCTCTGCGCGGAGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCA
GCGGCATCAGCACTTGTCGCTTGCGTATAAATATTTGCCCATGTGAAACG
GGGCGAAGAAGTGTCATATGCCACGTTAATCAACTGGTGAAACTCACCAG
GATGGCTGAAACGAAAAAACAATTCCTATAACTCGATGCCAGTTTCCGTA
ACGCCACC
UFO06972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 9..566 | 2790 | 100 | Plus |
| l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 9..566 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12138016..12138246 | 323..93 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 12137643..12137779 | 566..430 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 12137838..12137946 | 430..322 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 12138317..12138401 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:38 has no hits.
UFO06972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:17 Download gff for
UFO06972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 9..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:37 Download gff for
UFO06972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 9..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:52 Download gff for
UFO06972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 9..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:52 Download gff for
UFO06972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12137643..12137778 | 431..566 | 100 | <- | Minus |
| 3L | 12137838..12137944 | 324..430 | 100 | <- | Minus |
| 3L | 12138016..12138245 | 94..323 | 100 | <- | Minus |
| 3L | 12138317..12138401 | 9..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:37 Download gff for
UFO06972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12130743..12130878 | 431..566 | 100 | <- | Minus |
| arm_3L | 12130938..12131044 | 324..430 | 100 | <- | Minus |
| arm_3L | 12131116..12131345 | 94..323 | 100 | <- | Minus |
| arm_3L | 12131417..12131501 | 9..93 | 100 | | Minus |
