UFO06974.5prime Sequence
1096 bp (962 high quality bases) assembled on 2009-08-31
> UFO06974.5prime
CAGTCGACATGGATGAAAATAGCTTAATCTACGGACTCGAACTGCAGGCG
CGGGCTTTAACACCTCAGTACGGAGAGAGCAACGATGTGTGCTTCTTCAT
AGCCACCAACTCCTTGAAGCCCACCAATCAGGTTCACTTAATCCAGTACG
AGGAGGAGCAGGGATCCGTGCAATCAAAGGTCTTTGAGCACGCCCTGGGT
GAAGTTTGGAAACTAAATAGTTGTCCGCGTAATCCTCGCCTGCTGGCCTC
CGTCTACAATGTACAAAAGGGAGCACAAGTGCTGACCAAAGCGGCTCTGT
TTACGCTGCCCGAGAATCTCAATCCCGATCCGGAGCAGCTGAAGTCAGAG
TACCTGCCGTGGGAGCAGGTTGAGGTCCTGGATACCGAAGCACTGGGCGA
ACGTGTGAAGACCATCGAATTCCATCCCAACCAGGACACACTCGCCTGTG
TGGTGGACAACAAGGTGGCTGTGATGCAGCGGGCCGAGTCCTCTACTCGC
GTGGTGGCCGAGGTGCCGGCCAGTGGTTCATCCAGTGGATCTGCAAAGCA
CACACAGCATTTCACCAGCGGCAAGTGGTCGCATCATCATCAGGGCCACC
AGTTTCTCACCCTCCAGGATGGCAATCTAAGTGCCTACGATGTGCGGGAT
ACACAGCATTGTGCCTGGAGCATCAACGATGCGCATGGTCAAATGGTCCG
TGACCTGGACTGCAATCCCAACAAGCAGTGCCATTTGGTCACCGGCGGTG
ACGATGGCTACTTGAGGATCTGGGACTGTCGCATGCCCAAGGCTCCCGTT
TTCGAGCGCTCCGATCATTCGCATTGGGTCTGGTGCGTTCGCTTCAACAC
ATTCCACGACCAACTGATCCTCTCAGCTCAGTGACTGCAAGTGCTGCTCA
CGTGTGCGGATCAGTTACTTCGGAAACGCCGGTTTCAAGCTGGACCAAAA
GAGTGCAACGTCATTGGTGCCGAAGCCGAAGAAAAGACAAACTCATTGCC
AAATGGTCTTGCTGACGAACCTCGAACAGCAGAGGAATCGTTTATTGCGC
GAAGGGACGATGTGGATTCGAGGTTCTTTGCTACCTCATTACATGG
UFO06974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10646-RA | 1377 | CG10646-RA | 68..1147 | 9..1082 | 4695 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12502803..12503607 | 979..178 | 3600 | 97.9 | Minus |
| 3L | 28110227 | 3L | 12503655..12503827 | 181..9 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:30 has no hits.
UFO06974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:19:16 Download gff for
UFO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10646-RA | 75..1012 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:48 Download gff for
UFO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10646-RA | 60..997 | 1..934 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:27 Download gff for
UFO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10646-RA | 60..997 | 1..934 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:27 Download gff for
UFO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12502873..12503605 | 180..909 | 99 | <- | Minus |
| 3L | 12503657..12503835 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:48 Download gff for
UFO06974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12495973..12496705 | 180..909 | 99 | <- | Minus |
| arm_3L | 12496757..12496935 | 1..179 | 97 | | Minus |
