UFO06975.5prime Sequence
1112 bp (995 high quality bases) assembled on 2009-08-31
> UFO06975.5prime
CAGTCGACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCCA
GTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTCG
CACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTCA
ACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTAC
AACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCGA
ACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTTT
TGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACGT
AGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGAA
TTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAATC
ACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAAG
TACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATCT
GCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATCA
ACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTTC
ATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCGT
GCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTCA
CCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGATGGCACCA
TCGCCGGACCGCAAGAATGAGTCTCATTTGATATCAAGGAGGTGCCGCTG
GGCGAGCACAACTACCATGTCAATCAATTCGATCGCATTCGGCAGGATCA
GGCCAACGATCTGATGATTAGCTCGAGCATCTCCAGGATGCAAACATTTG
GAGCGTACATCCGCCGATGAGCGAACAGATGTGCGCCCATGCTGGGCGAC
GTGTCCGCGGAGTTACTGCGCCTGGCGGGAAAAAACACCTGCGACAAGGT
GTGTCAGAACATTGCGTTGATCTTTCGATCTCATGCAGAACATTTCCTTG
TATCGAAAATCC
UFO06975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 232..1338 | 9..1103 | 5035 | 97.8 | Plus |
| t-RA | 1975 | CG12120-RA | 232..1338 | 9..1103 | 5035 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218953..9219187 | 639..405 | 1175 | 100 | Minus |
| X | 23542271 | X | 9218773..9218894 | 761..640 | 610 | 100 | Minus |
| X | 23542271 | X | 9219253..9219365 | 404..292 | 565 | 100 | Minus |
| X | 23542271 | X | 9218588..9218704 | 876..761 | 535 | 99.1 | Minus |
| X | 23542271 | X | 9218349..9218529 | 1051..877 | 530 | 93.9 | Minus |
| X | 23542271 | X | 9221210..9221313 | 293..190 | 520 | 100 | Minus |
| X | 23542271 | X | 9221415..9221510 | 190..95 | 480 | 100 | Minus |
| X | 23542271 | X | 9222939..9223026 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:09 has no hits.
UFO06975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:59 Download gff for
UFO06975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1295 | 9..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:52 Download gff for
UFO06975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1295 | 9..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:54 Download gff for
UFO06975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 232..1295 | 9..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:54 Download gff for
UFO06975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9219253..9219363 | 294..404 | 100 | <- | Minus |
| X | 9221210..9221313 | 190..293 | 100 | <- | Minus |
| X | 9221416..9221509 | 96..189 | 100 | <- | Minus |
| X | 9045355..9045371 | 1067..1082 | 94 | <- | Minus |
| X | 9218334..9218529 | 877..1066 | 92 | <- | Minus |
| X | 9218588..9218704 | 761..876 | 99 | <- | Minus |
| X | 9218774..9218894 | 640..760 | 100 | <- | Minus |
| X | 9218953..9219187 | 405..639 | 100 | <- | Minus |
| X | 9222940..9223026 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:52 Download gff for
UFO06975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9112807..9112927 | 640..760 | 100 | <- | Minus |
| arm_X | 9112367..9112562 | 877..1066 | 92 | <- | Minus |
| arm_X | 9112621..9112737 | 761..876 | 99 | <- | Minus |
| arm_X | 8939388..8939404 | 1067..1082 | 94 | <- | Minus |
| arm_X | 9112986..9113220 | 405..639 | 100 | <- | Minus |
| arm_X | 9113286..9113396 | 294..404 | 100 | <- | Minus |
| arm_X | 9115243..9115346 | 190..293 | 100 | <- | Minus |
| arm_X | 9115449..9115542 | 96..189 | 100 | <- | Minus |
| arm_X | 9116973..9117059 | 9..95 | 100 | | Minus |
