UFO06976.5prime Sequence
1096 bp (986 high quality bases) assembled on 2009-08-31
> UFO06976.5prime
CAGTCGACATGGACGTTCGGATTAAGTGCAACAGCGAGGAGCCAGAGTCT
CCGGAGCAGAAGATCCTGGCGAGCAGCCAGCGCCTGCTGCAGTTCACCAA
CTGCCGCCTTGTACGCGACCACCGGATCATCCACGACGATCTGTGGGTTC
GCGACGGTCGGATCGTGAACCCAGAGCCTGTGTTCTTCGACGAGCGGACC
AAGGCCCACTGTCGCATCGACTGCGGGGGCGCCATCATCGCGCCCGGCTA
CATCGACCTCCAGATCAATGGTGGCTATGGCGTGGACTTCTCGTACGACA
CGGAGACCATCGAGGAGGGCGTGGCCACGGTGGCACGCGGCCTGGTCAAG
AGCGGAGTCACCTCCTTCTGTCCCACGCTGGTGACCTCGCCCAGCGACAG
CTACCACACCATCCTGCCGCGCATTCCCGCAGAGGTTCCCAAGGGCGCCG
GCATACTGGGCATCCATGCGGAGGGTCCGTTTATCAATCCGCAGAAAAAG
GGCGCGCATCCGGAGCACTGCATCCAGACCATTGATAAGGGACTCAGCAC
GCTGAAGGAGACGTACGGCTCGCTGGAACGCATTAAAATCATCACCCTGG
CGCCGGAGAAGGTCACCGACCCGGAGGTGATTGGCCAGCTGGTGGAGCGT
GGCATCACCGTGGCCCTGGGCCACTCGATGGCCTCGCTAAGCGACGGAGA
GAGGGCCGTGCAGCAGGGCGCCACGCTGATCACGCATCTGTTCAACGCCA
TGCTGCCGTTCCATCACCGCGATCCCGGCCTGGTGGGACTGCTGGCCTCG
GACGCAGTGCCGCACGGTAGGACCGTGTACTTCGGCATCATCTCGGACGG
AGTGCACACTCATCCGGCGGCACTGAGATCGCCTACCGCACGCATCCGCA
GGGCCTGATCCTGGTGACGGACGCCATATCGGCGCTGGGCCTCGAGGAGG
GTGTCCACCACATCGGACAGCTGCCGCTGCAGTTAGCAGGCAAGCGTTCA
TCGCAAGCACAGAAAACGCTGTGCGGCAGCATCGCCCGATGGACGAGTGG
GTGCCGATCTTCCGAAGGACGCACTGCTTTCTTGGTCTATGCATCA
UFO06976.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17065-RD | 1624 | CG17065-RD | 163..1253 | 9..1092 | 5080 | 98.3 | Plus |
| CG17065-RA | 1556 | CG17065-RA | 95..1185 | 9..1092 | 5080 | 98.3 | Plus |
| CG17065-RB | 1598 | CG17065-RB | 95..625 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20255144..20255675 | 1063..537 | 2280 | 97.4 | Minus |
| X | 23542271 | X | 20255763..20256033 | 540..270 | 1355 | 100 | Minus |
| X | 23542271 | X | 20256773..20257037 | 273..9 | 1325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:55:38 has no hits.
UFO06976.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:58 Download gff for
UFO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1164 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:40 Download gff for
UFO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1164 | 1..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:47 Download gff for
UFO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17065-RA | 90..1164 | 1..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:47 Download gff for
UFO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20255132..20255672 | 540..1071 | 97 | <- | Minus |
| X | 20255764..20256032 | 271..539 | 100 | <- | Minus |
| X | 20256776..20257042 | 1..270 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:40 Download gff for
UFO06976.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20127802..20128068 | 1..270 | 98 | | Minus |
| arm_X | 20126158..20126698 | 540..1071 | 97 | <- | Minus |
| arm_X | 20126790..20127058 | 271..539 | 100 | <- | Minus |
