UFO06977.5prime Sequence
1067 bp (968 high quality bases) assembled on 2009-08-31
> UFO06977.5prime
CAGTCGACATGTCGATCTCCGATTTCCGCAAAAAGAAGCTGCTTTTTCTG
TTCAATGTGTTCTTTGATGTGAACCAAAGCGGCGAAATCGACGTTAAGGA
CTTCGAGCTGGCCATCGAGCGCGTTTGCCAACTGCGCGGCTGGCAGAAGG
ACACGCCGAAGAACAAGGAGACCTACGACCTGATGATGGAAATCTGGACT
GGCCTGCGCTCCAAGGCCGACAAGGACAACGATGGACAGGTCAGCGTGGA
CGAGTGGTGCAACATGTGGGACGCCTATGCCAAGGATCCCAGCAGCGTGA
TGGACTGGCAGAATGCCTACATGAACTTCATGTTCGACCTGGAGGATGCC
TCGCACGATGGAGGCATCGATGTGACCGAATTCACGCTGGTCTGCTCCAG
CTATGGCCTGGAGAAGACCGAGTGTGAGGAAGCCTTTGCGAAGATGTCTC
AGGGGCAGAGCGAGGTCACCCGGGAGCAGTTCGCCGCCTTGTGGAAGGAG
TACTTCGCCGCCGAGGATGTGAATGCGCCTGGCAACTACATTTTTGGAAA
GACCAGTTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGACCTGATCGCAGCGCATCA
GCACTTGTCGCTGCGTATATATTTGCCATGGTGAAACGGGGCGAGAGTGT
CATATGCCACGTTTAATCAACTGGTGAACTCACCCAGGATGCTGAAACGA
AAAACCTATCTCATATCGTTAGGAATAGCAGGTTCACGTACCGCCAACTG
CCATAATGGTACTGCGA
UFO06977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp2-RA | 1283 | CG14904-RA | 201..752 | 9..560 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16575074..16575397 | 560..237 | 1620 | 100 | Minus |
| 3R | 32079331 | 3R | 16576921..16577044 | 241..118 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 16578990..16579047 | 66..9 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 16577321..16577374 | 119..66 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:38 has no hits.
UFO06977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:57 Download gff for
UFO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp2-RA | 193..753 | 1..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:24 Download gff for
UFO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp2-RA | 196..756 | 1..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:29 Download gff for
UFO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp2-RA | 196..756 | 1..565 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:29 Download gff for
UFO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16577321..16577373 | 67..119 | 100 | <- | Minus |
| 3R | 16578990..16579052 | 1..66 | 93 | | Minus |
| 3R | 16575070..16575394 | 240..565 | 99 | <- | Minus |
| 3R | 16576923..16577042 | 120..239 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:24 Download gff for
UFO06977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12400792..12401116 | 240..565 | 99 | <- | Minus |
| arm_3R | 12402645..12402764 | 120..239 | 100 | <- | Minus |
| arm_3R | 12403043..12403095 | 67..119 | 100 | <- | Minus |
| arm_3R | 12404712..12404774 | 1..66 | 93 | | Minus |
