UFO06981.5prime Sequence
1104 bp (976 high quality bases) assembled on 2009-08-31
> UFO06981.5prime
CAGTCGACATGGATAACAGTAGCGGTCAAAACAGCAGAACGGCTTCGTCA
GCGTCCACAAGCAAAATAGTCAACTATTCGTCACCAGTCTCGCCAGGAGT
CGCAGCCGCCACCTCCTCATCCTCATCATCCAGCAGCAGCGGCATGAGTA
GCAGCCAGGAGGACACCGTACTGGGATTATTTACGCCCAAAAAGGAGTTC
CCCAATGCCAAGATGCTGCAGACCATCAGGGAGAAGCTAATGACGCCCGG
CGGAGCCTGTGACCTTCTGGCCCTGGGCATCGCAGCGGAACCCACAGACC
AGCAGCCCGTCAAGCTCATCCAACAGCGTTATCTGATCAGCGCACAGCCT
AGTCACATATCGGCCGCCGTGGCTGCCAAGACTCCCGCCTCGTATCGCCA
CTTGGTCGATCTAACCGCCTCCAATCTGCGCTGCGTGGACATCTTCACCG
GGGAGCAGTTCCTCTGCCGTATTGTAAACGAACCGTTGCATAAGGTGCAA
CGAGCCTACTTTCAGCTGCAGCAGCACGACGAGGAGCTACGCCGGAGCAC
CATCTATGGCCATCCACTGATCCGACCCGTGCACGATATCATACCGCTTA
CCAAGGATCGCACCTACATCCTCATTGCGCCCGTGCCCCAGGAGAGGGAC
TCCACGGGTGGGGTGACCGGGGTGTACGAGAACCTGCACACCTACATCCG
CCACGCGAAGCGACTGTGCGAGACGGAGGCGAGGGCCATATTCCACCAGA
TCTGTCAGACTGTTCAGGTGTGCCACCGCAACGGGATTATCCTCAGGACC
TCAGGCTCAAGCGGTTCTACTTCATCGACGAGGCCAGAACGAAACTGCAG
TATGAATCACTGGAAGGCTCATGATCCTCGACGGCGGAGGACGATACTCT
GAGCGACAGATCGGGTTGCCCACTGTACACCGCCTCCAGAACTGCTGTGC
CCCCAGCAAACGTACAAGGCAAACCGGCGACATGTGGTCGCTGGGCGTGA
TCCTGTAAACCATGTTGGTGGGGTCAGTACCGGTCTACAAAAAGGCCACT
TGCACCTCATTACGGTTCATAACGCCACGGAAATGTCGAACCTGGACCTG
TTCT
UFO06981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trbl-RA | 2372 | CG5408-RA | 354..1434 | 8..1087 | 4960 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20400426..20401256 | 837..8 | 4090 | 99.8 | Minus |
| 3L | 28110227 | 3L | 20397290..20397478 | 1022..835 | 615 | 94.2 | Minus |
Blast to na_te.dros performed 2014-11-28 18:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 5142..5191 | 794..743 | 111 | 71.2 | Minus |
UFO06981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:55 Download gff for
UFO06981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 345..1395 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:37 Download gff for
UFO06981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 346..1396 | 1..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:45 Download gff for
UFO06981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trbl-RA | 346..1396 | 1..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:45 Download gff for
UFO06981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20397264..20397475 | 838..1048 | 93 | <- | Minus |
| 3L | 20400426..20401260 | 1..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:37 Download gff for
UFO06981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20390364..20390575 | 838..1048 | 93 | <- | Minus |
| arm_3L | 20393526..20394360 | 1..837 | 99 | | Minus |
