UFO06983.5prime Sequence
1063 bp (949 high quality bases) assembled on 2009-08-31
> UFO06983.5prime
CAGTCGACATGGGTTCCCTGGAGAAGCTGAAACAATTGAGACTGATACAC
CTGTGCATCGCGCTCACCTTCTTTACCAGCGGGCTGTGCATCAACTTTAT
CCAGCTGCTGATGCACGTCTTTATCAAGCCCATAGACAAGCGACTCTTCC
GCAAGTTGATGTACTATGCCTGCTATTCGCTTTACTCCCAACTTATCTTC
GTGTCCGATTGGTATGCCGGCAGCAAGATGACTGTCTACATGGACAAGGA
GGACTTCGAGAAGCATGCCGGCAAGGAACACGTCCTTCTGATCATGAACC
ATAAATACGAGATCGATTGGCTCAACGGCTGGATGATCTGCGAAAAGTTG
GGCGTGCTGGGCAACTGCAAGGCCTATGCGAAGAAGGCAATCCGCTACGT
GCCCATCATCGGCTGGGGCTGGTGGCTGGCCGAGTTCGTCTTCCTCAATC
GAAACTTCGACCAGGACAAGACCATCATCACCGAACAGCTCAAGGTGGTC
TTCTCCTATCCCGATCCCACCTGGCTTTTGCTCAACGCCGAGGGCACTCG
CTTCACTCCCGCCAAGCACGAGGCATCCGTAAAATTCGCCCAGGAGAGGG
GCATGACGGTGCTGAAGCACCATTTGATCCCGCGCACCAAGGGATTCACC
GCCAGCTTGGCACCCATCCGCGGTCTCTGTCCGGTAATCTACGACATTAA
TCTAGCGTACAGGCCCACAGATAAGACCCCCGCCACAATGCTGAGTTTGC
TGCATGGAAAGAGCGTGGAACCGCACCTGCTGATGAGGCGTATTCCACTG
GAACAGGTTCCGGAGGATGAGAAGGAGGCGGCCGCCTGGCTGCAGAACCT
GTTCGTGAGAGACAGATCATCGATAGCTTCCTGGAGACGGGCAGCTTCTT
TAGACGTCGGCATAAAGGAGTCCGGCATATGTGATAAACGCGCTGTGCTC
ACCTCGTGACTTTGTCTGCTGGGCGGTATTCTTCTCTGTCTGCATTTTCT
ACTACTGATCCATTCCTGCTGGCGCACTGAACGCTTATCACGCACTTCGT
CTGGAACTTTTAC
UFO06983.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4729-RE | 1849 | CG4729-RE | 389..1417 | 9..1024 | 4745 | 98.3 | Plus |
| CG4729-RB | 1672 | CG4729-RB | 212..1240 | 9..1024 | 4745 | 98.3 | Plus |
| CG4729-RC | 1676 | CG4729-RC | 216..1244 | 9..1024 | 4745 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16383331..16383866 | 725..190 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16383927..16384107 | 189..9 | 905 | 100 | Minus |
| 3L | 28110227 | 3L | 16382449..16382741 | 1005..724 | 845 | 92.2 | Minus |
| 3L | 28110227 | 3L | 16379722..16380156 | 703..269 | 540 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:35 has no hits.
UFO06983.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:53 Download gff for
UFO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RB | 204..1240 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:49 Download gff for
UFO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 209..1244 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:07 Download gff for
UFO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4729-RC | 209..1244 | 1..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:07 Download gff for
UFO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16382429..16382739 | 726..1022 | 93 | <- | Minus |
| 3L | 16383331..16383866 | 190..725 | 100 | <- | Minus |
| 3L | 16383927..16384116 | 1..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:49 Download gff for
UFO06983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16375529..16375839 | 726..1022 | 93 | <- | Minus |
| arm_3L | 16376431..16376966 | 190..725 | 100 | <- | Minus |
| arm_3L | 16377027..16377216 | 1..189 | 98 | | Minus |
