UFO06985.5prime Sequence
1102 bp (1002 high quality bases) assembled on 2009-08-31
> UFO06985.5prime
CAGTCGACATGGTGAAAGGAACTCTGTACACTTACCCCGAGAACTTCCGG
GCCTACAAGGCGCTCATCGCAGCCCAGTACTCCGGAGCCCAGGTGAAAGT
GGCCGACAACTTCAAGTTCGGCGAGACCAACAAGTCGGCTGAGTTCCTCA
AGAAGTTCCCCGGTGGCAAGGTACCCGCCTTTGAGACCGCCGAAGGACAG
TACTTGAGCGAGTCCAATGCCATCGCCTACCTGCTGGCCAACGAGCAGCT
GCGCGGCGGAAAGTGCCCCTTCGTGCAGGCCCAGGTCCAGCAGTGGATCT
CCTTCGCCGACAACGAGATTGTGCCTGCCTCCTGTGCCTGGGTCTTCCCC
CTGCTGGGCATTCTGCCGCAGCAGAAGAACAGCACTGCCAAGCAAGAGGC
CGAGGCTGTGCTGCAGCAGCTCAACCAGAAGCTGCAGGACGCCACCTTCC
TGGCCGGCGAGAGGATCACATTGGCCGACATTGTGGTCTTCAGCAGTCTG
CTCCACCTGTACGAGTACGTCCTGGAGCCCAGTGTGCGCAGTGCCTTCGG
CAACGTGAACCGCTGGTTCGTCACCATCCTCAACCAGAAGCAGGTCCAGG
CCGTCGTCAAGGACTACAAGCTGTGCGAGAAGGCCCTGGTCTTCGACCCC
AAGAAGTACGCCGAGTTCCAGGCCAAGACCGGAGCCGCCAAGCCCCAGCA
GCAGGCTCAGCAGCAGAAGCAGGAGAAGAAGCCCAAGGAAAAGAAGGAGG
CGCCCAAGAATGCTGCCGAGCCCGCCGAGGAGTTGGACGCCGCCGATGAG
GCCCTGGCCGCCGAGCCCAAGTCCAAGGACCCCTTCGATGCGCTGCCCAA
GGCACCTTCAACTTCGATGACTTCAGCGCGTGTACTCCAACGAGGACGAG
GCCAGTCCATTCCCTACTTCTTCGATAGTTCGATGCCGAGAACTACTCGA
TCTGGTTTGGCGAGTACAATACAACGAGGAGCTGTCAGTGTTCATGTCGT
GCATCTCATCACCGCATGTTCAGCGTCTGACAAGAATGCGCAGCGGCCTC
GCCTCGTTGCCTGTTCGGCGAGGAACGAACAGAACCATCTCCTGGTATCT
GT
UFO06985.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1gamma-RC | 1689 | CG11901-RC | 60..1169 | 8..1101 | 5005 | 97.8 | Plus |
| Ef1gamma-RA | 1662 | CG11901-RA | 33..1142 | 8..1101 | 5005 | 97.8 | Plus |
| Ef1gamma-RB | 1685 | CG11901-RB | 56..1165 | 8..1101 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29220641..29221495 | 169..1014 | 3850 | 98.6 | Plus |
| 3R | 32079331 | 3R | 29220430..29220581 | 21..172 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:39 has no hits.
UFO06985.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:51 Download gff for
UFO06985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 79..1197 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:51 Download gff for
UFO06985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RA | 24..1142 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:33 Download gff for
UFO06985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1gamma-RB | 47..1165 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:33 Download gff for
UFO06985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29220430..29220579 | 21..170 | 100 | -> | Plus |
| 3R | 29220643..29221589 | 171..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:51 Download gff for
UFO06985.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25046152..25046301 | 21..170 | 100 | -> | Plus |
| arm_3R | 25046365..25047311 | 171..1102 | 97 | | Plus |
