UFO06988.5prime Sequence
1114 bp (1012 high quality bases) assembled on 2009-08-31
> UFO06988.5prime
CAGTCGACATGTGCCTGGTGGCAGTCGCCTGCGCCGATAAGCTCGGCTAC
AACTACCAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTTGCTCCTGG
AAGTGGCAGCATTGGAGGTGGATCCATTGGAGGTGGTTCGATTGGAGGAG
GCTCCATTGGAGGAGGATCCATTGGAGGAGGCCTCATTGGTGGTGGCTCT
ATCGGAGGCGGTTCCATTGGAGGTGGTTCCCTTGGTGGTTCCATCGGTGG
TGGCTCTATTGATTCCGGTCTTGGCGGTCTTGGTGGACTCGGTGGTCTAG
GAGGTGGCGACGCTCTGGCCGCTCCAGTCTCCTACAACGCCCCCGCTCCC
GCTGCTGAGCTCCAGAAGGAGTTCTTCACCTACTCCGCCAACGAGCAGGA
CTTCGATGAGCCACAAGAACTGGAGCGTGTTGCTGGATCCGTAAACAAGG
GACTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGTCTGGAGAAC
GCTGCCCTAGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACCGCCATCTA
TGTCCTGAACAAGCAGGCCGATATTGGAGATCTTGCCCAGAAACTGAACG
CCATCCGCAACAACAATAACAACAAGCCCGAGGTGCACTTCGTCAAGTAC
CGCACTCCCGAGGATGCTGCCAACGCCCAGCGCGCCATCCAGTCGCAGTA
CGACCAATTGGGGAGGATCCTCTCACGCCCACAACGGTGGTGTGGCACCC
GCCCTGAACTTCGCCTCCGCTGGTCCCGTCCAGAAAGCTAATGCTCAGAT
CCCTGAGAACGCTTACCTGCCCACTTCCATCTTTCCGTCGTCGTTTGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCCACCAATAAAAAACGCCCGGCGGCACCGAG
CGTTCTGAACAAATTCAGAATGAGAGTTCTGAGGTCATTACTTGGATTCT
ATCCACAAGGAGTTCCAAGCGAGCCTCGATTATCAAATTAGGCTCGCCTG
CACTCTATCGCGAG
UFO06988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 69..905 | 9..847 | 4115 | 99.5 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 133..969 | 9..847 | 4115 | 99.5 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 73..897 | 16..842 | 3275 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624684..26625520 | 847..9 | 4065 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26622593..26623403 | 827..16 | 3245 | 93.6 | Minus |
| 3R | 32079331 | 3R | 26632323..26632824 | 320..822 | 1700 | 89.7 | Plus |
| 3R | 32079331 | 3R | 26619592..26620034 | 327..770 | 1450 | 89 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 366..768 | 1035 | 84.4 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 768..360 | 1005 | 83.6 | Minus |
| 3R | 32079331 | 3R | 26634088..26634494 | 357..764 | 835 | 80.9 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 779..438 | 820 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26619262..26619485 | 9..235 | 620 | 85.9 | Plus |
| 3R | 32079331 | 3R | 26620812..26621063 | 707..456 | 435 | 78.2 | Minus |
| 3R | 32079331 | 3R | 26631943..26632040 | 3..100 | 340 | 89.8 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 516..710 | 315 | 77.4 | Plus |
| 3R | 32079331 | 3R | 26656956..26657058 | 465..567 | 275 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:55:33 has no hits.
UFO06988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:49 Download gff for
UFO06988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 62..908 | 1..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:35 Download gff for
UFO06988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..972 | 3..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:43 Download gff for
UFO06988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RB | 130..972 | 3..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:43 Download gff for
UFO06988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624681..26625523 | 3..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:35 Download gff for
UFO06988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450403..22451245 | 3..850 | 99 | | Minus |
