UFO06989.5prime Sequence
1077 bp (974 high quality bases) assembled on 2009-08-31
> UFO06989.5prime
CAGTCGACATGGCTCAACGAACACATAGATATATATGTTTGGCGGGTTCC
ATGGTGCGAAACTTTCACACGGCGCGTTTTCCACGATGTGATAAAGTGGC
AATGTCAAATTTTGATACCGGAATTCCCTTGCCCTATAAGAAGTTGAGGG
AAAACCTGGATTGCATCAAGGGTCGACTGGGTGGACCGCTAACCTTGTCG
GAGAAGGTGTTATATTCCCATTTGGATCAACCGGATTCACAGGAAATCGA
ACGAGGCAAGTCCTATTTGCGATTGCGACCAGATCGCGTTGCCCTGCAGG
ATGCGACTGCCCAGATGACGCTACTGCAGTTCATTTCGTCGGGCCTGAAG
AAGGTAGCAGTTCCATCCACCGTCCACTGTGATCACTTAATTGAGGCCCA
GATCAGTGGCGATAAGGACTTGGCCAGGGCTAAGGATCTGAACAAGGAGG
TGTACGATTTTCTGTCCTCGGCGTGTGCCAAGTATAACTTGGGTTTCTGG
AAGCCTGGCAGCGGCATAATTCATCAGATCATTTTAGAGAACTATGCATT
TCCCGGACTACTGATGATCGGAACTGATTCCCATACTCCGAATGGCGGCG
GACTGGGTTGCCTGTGCGTTGGAGTTGGTGGTGCAGATGCCGTCGATGTG
ATGGCGAATATACCGTGGGAACTCAAGTGCCCGACCGTGATTGGATGCCA
TCTCACGGGTAAGATCAGTGGGTGGACTTCGCCCAAGGATGTCATCCTTA
AAGTGGCCGAGATTCTGACCGTTAAAGGAGGTACGGGTGCCATTGTGGAG
TACCATGGTCCTGGTGTCGAATCTATTTCCTGCACAGGCATGGCTACTAT
TACCAACATGGTGCTGAAATCGTGCCACAACTTCATATTTCCATTCACGA
ACGCATGGTCACATATTTGCGTGCAACCGGTAGAGGTGCATCGCTGATGA
GCCACAAAGAATAAAGATCTTTTTGGTCCGATGAGGGTGCCAAATACGAA
TAAGGTGATCGAGAATCATTGAACCTGGACGCTGGGGATGGCCTCCACTC
CGATTGCCATCCATAGTAAACTGGTCG
UFO06989.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4706-RA | 2566 | CG4706-RA | 76..1087 | 9..1014 | 4745 | 98.4 | Plus |
| Acon-RF | 3102 | CG9244-RF | 503..1094 | 282..872 | 1000 | 78.2 | Plus |
| Acon-RE | 3022 | CG9244-RE | 422..1013 | 282..872 | 1000 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11137252..11138263 | 9..1014 | 4545 | 98.4 | Plus |
| 2L | 23513712 | 2L | 21170458..21171037 | 282..861 | 980 | 77.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:59 has no hits.
UFO06989.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:48 Download gff for
UFO06989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4706-RA | 69..1098 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:55 Download gff for
UFO06989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4706-RA | 69..1098 | 1..1024 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:12 Download gff for
UFO06989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4706-RA | 69..1098 | 1..1024 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:12 Download gff for
UFO06989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11137245..11138274 | 1..1024 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:55 Download gff for
UFO06989.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6962967..6963996 | 1..1024 | 97 | | Plus |
