UFO06990.5prime Sequence
1098 bp (972 high quality bases) assembled on 2009-08-31
> UFO06990.5prime
CAGTCGACATGCTGAGCAGATTGGGCCGGAGTGGTCGGGCCGGTGTGCGC
ACCTTTGCCAATGACATTCGCTTTGGAGCCGAGGCGCGCTGCCTGCTTAT
GCAGGGCGTGAACGTCCTGGCCAACGCGGTGGCCACCACTCTGGGCCCGA
AGGGCAGGAACGTGCTCATCGAACAGCTGCTGATCTCGCCCCGGATCACC
AAGGATGGCATCACGGTGGCGAATAACGTGCAGCTGGGCAATCGTCGGCA
GGATATGGGAGTTCAATTGCTGCGCCAGGCCACCAATAATACCAATAATA
AGGTAGGCGATGGCACCACCACGGCCACTATTCTGGCCCGTGGAATAGCC
TGCCAGGGTATGCATGTGTTGCGCCAGAGCAAGGTGAACGTCCAACTCCT
GCGGGAGGGCATTCTCGAGGGATCGCGCGCTGTGTGCGATGCTCTAGGTG
AGATGTCCCAGTCGGTGGATACTATTGGCCAAGTGGAAGCAGTGGCCAAG
GTGGCACTGAATGGAGACGAACGGCTGGCGGAGCTGATTGGTGACATCAT
TTTGGAGCTGGGCGATAGCGGCGTCATCCTGCTGAAGGAATCCCACAGTC
CCTTCGATGAGGCTAAGATCCAGGAGGGTATAACCATCGCTTCGGGCTAC
TATTCGCCATTCTTTGCCAAGCAATCTCATACCCTGGAATTGGAGAATTG
CTTGCTGCTGCTCACTTTGGCTAAGATTGATCAAGTGGAACAGATACTTC
CCGCTCTCGAGCTGGCCAGACTAAAAGAACGACCCCTTCTGATCATTGCC
AAAAATTTTGGTAGCGATTTGCTTAAGATCTTAGTGCTAAATAATCTGCA
AGGTCGAGTTCAGTCTGTGCTGTGAAGCTCCAAGCTTTGGGGACGAGCAG
TGCGAGGAAATGGAGGATATAGCTTTTGCCACCGGTGGCCATCTTCTGGA
GGATGCCTCCAGTCTGGCGGATCTCACGAGGAGGATCTGGGTGAGGTGAT
GGAAGGCCGGTGGTTGACGCCTAGGAAACGCACCTATTGCCACCGATCAA
TGTGACGAGGAGCAGTGGCAGTGCCCACTCAGACTCTGAGCTGATCGA
UFO06990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60D-RB | 1960 | CG16954-RB | 152..1220 | 9..1075 | 5115 | 98.9 | Plus |
| Hsp60D-RA | 1894 | CG16954-RA | 86..1154 | 9..1075 | 5115 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13448278..13449346 | 1075..9 | 4985 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:06 has no hits.
UFO06990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:46 Download gff for
UFO06990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RB | 142..1219 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:50 Download gff for
UFO06990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 82..1159 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:53 Download gff for
UFO06990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60D-RA | 82..1159 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:53 Download gff for
UFO06990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13448288..13449350 | 1..1065 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:50 Download gff for
UFO06990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13448288..13449350 | 1..1065 | 98 | | Minus |
