UFO06991.5prime Sequence
1001 bp (901 high quality bases) assembled on 2009-08-31
> UFO06991.5prime
CAGTCGACATGCCGGCGGCGAAGTGCGGTTGTTTGAAGAAGGAGGCTCGC
GTCCATGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTC
CGGAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGT
TTCCCAGCTGCCACGACAGGAATTACACCAGCAAGGATAATGATGGTCCC
ATGATGGTGCTACCCGCAGTGTCTGGAGCTCCGTATAGAGTCCTTTACGA
TTTGATTGAGTTCTGCCCACTGATGGACTCCAGCTGCATGGGCTTCTGCG
ACTGGAAGCGCATTGCCAACGAAGTGGGAAAGACATACAAGTCCTACGAC
GGCTTTGTGATCCTCCATGGAACGGATACCCTAGCCTACTCCGCCTCGGC
ACTAGCGTTCATGCTTGAGAGCCTGAACAAGCCCGTGGTATTCACTGGGG
CACAGATTCCGATCTTTGAAGCCCGCAGCGATGGGCGGGAGAACTTCTTG
GGCGCACTTCTCATAGCAGGAAATTACAGTATACCCGAAGTGCTGGTCTT
CTTCGGCAACAAGATTCTACGTGGCTGTCGCTCCACGAAGCTCAATTCTG
ACTCTTTTCACGCACTGGACTCACCAAATTTTGCACCATTGGGTCGGGCG
AGTGTCAACATTGAGATCAACAGCCGCCAAATCTTCCGACCGTGCAATAT
TAAACCATTTTCACTTCATTCGGAACTCGAAAAGACGTGCGCTGCTGCGT
ATTTACCCGGGATAGTGCCAGTGTGGTGCAGCAATCCTGAAAGAGCACGA
AAGTGTGTCTCAGACTTTGGGCGCAATTTCGTATCGTGAGACTGCTGACG
ACTGAGGAGCGTCACAGAGCGTATATGTCACATACGCATGCTCGGCGGGC
ATGTGCACATTACGAGACCAGCAGTCTGATGGAGTGGCGTATACCGGCTA
CGATTGACTCAGGAGCAGCTTTACGACCTGCTATGTGCTGTCAGCGGAAG
T
UFO06991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8526-RA | 2069 | CG8526-RA | 201..1237 | 9..992 | 3895 | 94.6 | Plus |
| CG8526-RB | 2066 | CG8526-RB | 201..1234 | 9..992 | 3840 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9801914..9802385 | 330..796 | 2130 | 98.7 | Plus |
| 3R | 32079331 | 3R | 9801627..9801852 | 104..329 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 9801480..9801576 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:19:12 has no hits.
UFO06991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:45 Download gff for
UFO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 143..948 | 9..808 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:56 Download gff for
UFO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 201..1006 | 9..808 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:09 Download gff for
UFO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8526-RA | 201..1006 | 9..808 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:09 Download gff for
UFO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9801480..9801576 | 9..105 | 100 | -> | Plus |
| 3R | 9801629..9801852 | 106..329 | 100 | -> | Plus |
| 3R | 9801914..9802398 | 330..808 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:56 Download gff for
UFO06991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5627202..5627298 | 9..105 | 100 | -> | Plus |
| arm_3R | 5627351..5627574 | 106..329 | 100 | -> | Plus |
| arm_3R | 5627636..5628120 | 330..808 | 98 | == | Plus |
