UFO06995.5prime Sequence
997 bp (918 high quality bases) assembled on 2009-08-31
> UFO06995.5prime
CAGTCGACATGACTCGGGAATCGGCAGTCGCCACCAAAAGAAATTGGGCG
ATTCTGGCCGCAGGAGTTGGCTTGGTATACGTCCTGGTGCGGCACAGGCA
CCGACTGCTGTGTCCACTGCGTCGCGTCTGGTCCTTCGGCAGCCTGGTGC
CCCAGCGACGCATAGAAGTGATCAACTCCGTCCAGGATCCGACCACGCAA
TGGGTTTTGAATGAACTGAAGAATCACTGCCAGACTTTTAAAGTCCTTGG
ATTCGATTGCGAGTGGATCACCGTGGGCGGCAGCCGCAGGCCAGTGGCCT
TGCTCCAATTGAGCTCCCATCGGGGTCTATGTGCCTTATTCCGACTGTGC
CATATGAAACAAATACCCCAGGATCTGCGGGAGCTTCTCGAGGACGATTC
CGTGATCAAAGTGGGCGTGGCACCCCAGGAGGATGCCATGAAACTTTCGC
ACGACTATGGAGTAGGCGTGGCCAGCACACTGGATCTGCGCTTCCTCTGC
GTAATGGCAGGCCACAAACCTGAGGGACTGGGAAAGCTCTCCAAAACTCA
CCTGAACTATACACTGGACAAGCACTGGCGCCTGGCCTGCTCCAACTGGG
AGGCCAAGACTTTGGAGCCAAAACAGCTTGATTACGCTGCCAACGACGCA
CTTATGGCGGTGGCCATTTATCAAAAATTGTGCAGGGATCTGCAGCCAAA
ACACTTTTGGCAACGAAGGCAACTGGACGACAATAGCATGCACAACAAAT
TCGAACCCTTTCTCGACGTGACTTCACGAAAGGCTTCACACTCAACCCGT
CCGGCAGCGGAGTACTCGTTCAAGGGCTCCACCCAATCCAAAAGCAATAA
TGGTGCCCAGAGCACGTACGCAATAGCTACCGACAAGACTTCTACGATAC
TGCTGCTGCAGCGCCGATGCGACTCTGTGTACATGACAGGCGCAGCGTCT
GTATCTCATCAATCTGGCACGCATATACGAAAGCTCTGTCGCTACTT
UFO06995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6744-RB | 1851 | CG6744-RB | 32..1033 | 9..977 | 4245 | 96.7 | Plus |
| CG6744-RA | 1947 | CG6744-RA | 128..1129 | 9..977 | 4245 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11434670..11435299 | 850..224 | 3000 | 99.5 | Minus |
| 3R | 32079331 | 3R | 11435362..11435576 | 223..9 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:40 has no hits.
UFO06995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:43 Download gff for
UFO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1062 | 9..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:03 Download gff for
UFO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1062 | 9..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:35 Download gff for
UFO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6744-RA | 128..1062 | 9..922 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:35 Download gff for
UFO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11434580..11435299 | 224..922 | 97 | <- | Minus |
| 3R | 11435362..11435576 | 9..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:03 Download gff for
UFO06995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7261084..7261298 | 9..223 | 100 | | Minus |
| arm_3R | 7260302..7261021 | 224..922 | 97 | <- | Minus |
