UFO06996.5prime Sequence
1047 bp (944 high quality bases) assembled on 2009-08-31
> UFO06996.5prime
CAGTCGACATGTCCAACGCAGACGTGCAATTTAACTACGGCCAGCAGGGA
AATGGCGACAACTTCAACGACGACAGCAACCAGCAGCAGGATGAGGATGA
CCAGTACAACGAAGATGGCGGTGGCAAGATCGAGAACGTCGGCGAGAGCC
CCAAATTCGTTCGGTTGCGCGGCCTGCCCTGGTCCGCAACGCACAAGGAG
ATCCTCGACTTTCTGGAAAACGTGAATGTGACTAATGGCTCGGCGGGCAT
TCACCTGGTCACCAGTCGGGTCGACGGCAAGAACACCGGCGAGGCGTACG
TGGAGGTGGCCAGCCAGGAGGACGTCGAAGAGGCTCGCAAGCTGAACAAG
GCCAGCATGGGTCACCGCTACATTGAAGTTTTTACCGCCACGCCCAAGGA
GGCCAAGGAAGCCATGCGGAAGATCAGCGGACACGGCACGGCCTTCGTTG
TGAAGCTTCGTGGTCTGCCATATGCCGTCACTGAGCAGCAAATCGAGGAG
TTCTTCTCTGGGTTGGATATCAAAACGGATCGGGAGGGCATACTTTTTGT
TATGGACAGAAGGGGTCGTGCAACTGGGGAAGCTTTTGTTCAGTTCGAAA
GCCAGGACGACACTGAGCAAGCCTTGGGCCGAAATCGGGAAAAAATTGGG
CACAGGTATATTGAGATATTCCGCAGCTCGATTGCTGAAATGAAGAGGGC
CACAGGCGCCGGTGGCGGTGTCGGAGGACGCCCTGCCCTTATGACATACG
TGATCGTGGTGCCAACCGTGGTGGCAATGATTTCGGCGGAGGGCGCAATG
ATTGGGGCAACAATGGCAACTTTGGCGTTGGTGCCAACAACATGCTGGGC
TTCAACAATCTGCCAAGCCTGATGAACTCGGGCAACTTTGGAAACACCAA
GTGAAATATGTAATTTTGTAAATACTCTGGACCAGCAATTCGGCAACTTG
GTGCCGCACACCGGTGAAATCGCACTTTGAAACGACGTGTAACAGCGAAA
CTTGTACCTTCGGCATATGAGCCGAACCTTCGCGCACACACGCGCGT
UFO06996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
glo-RA | 2117 | CG6946-RA | 148..1163 | 9..1003 | 4460 | 97.2 | Plus |
glo-RB | 2129 | CG6946-RB | 73..1088 | 9..1003 | 4460 | 97.2 | Plus |
glo-RC | 2059 | CG6946-RC | 148..650 | 9..511 | 2470 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11818569..11818942 | 382..9 | 1810 | 98.9 | Minus |
3R | 32079331 | 3R | 11817192..11817339 | 657..510 | 740 | 100 | Minus |
3R | 32079331 | 3R | 11816612..11816759 | 800..654 | 690 | 99.3 | Minus |
3R | 32079331 | 3R | 11818005..11818139 | 511..377 | 675 | 100 | Minus |
3R | 32079331 | 3R | 11816449..11816549 | 896..796 | 490 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:01 has no hits.
UFO06996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:43 Download gff for
UFO06996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RA | 229..1138 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:51 Download gff for
UFO06996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..982 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:03 Download gff for
UFO06996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
glo-RB | 73..982 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:03 Download gff for
UFO06996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11816612..11816757 | 656..800 | 99 | <- | Minus |
3R | 11817194..11817338 | 511..655 | 100 | <- | Minus |
3R | 11818006..11818137 | 379..510 | 100 | <- | Minus |
3R | 11816449..11816544 | 801..896 | 100 | <- | Minus |
3R | 11818573..11818942 | 9..378 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:51 Download gff for
UFO06996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7642171..7642266 | 801..896 | 100 | <- | Minus |
arm_3R | 7642334..7642479 | 656..800 | 99 | <- | Minus |
arm_3R | 7642916..7643060 | 511..655 | 100 | <- | Minus |
arm_3R | 7643728..7643859 | 379..510 | 100 | <- | Minus |
arm_3R | 7644295..7644664 | 9..378 | 99 | | Minus |