UFO07002.5prime Sequence
1113 bp (999 high quality bases) assembled on 2009-09-15
> UFO07002.5prime
CAGTCGACATGTCAGAAGTAGTACGAAACACTCTGGTAAAACTGCAGGCC
ATAATCGCACTGATCGGTTTGGCGGCCATAACGCCACTACTCATTTTGGT
AGCACTACTCGGCCGACTGATCGCCAAACTCTGCTGGTGCTCGGCGCCGA
AAAGTATCGCGGGAGAAGTGGCCGTGGTCACTGGAGCTGGTCATGGACTA
GGTCGTGCCATATCCTTGGAACTGGCTAAAAAAGGCTGTCACATCGCCGT
GGTGGATATCAATGTTTCCGGAGCGGAAGACACCGTCAAGCAAATCCAAG
ATATCTATAAGGTTCGCGCAAAGGCATACAAGGCCAATGTAACCAATTAC
GACGATCTAGTTGAGCTGAACTCCAAAGTGGTCGAGGAAATGGGTCCAGT
TACCGTCCTGGTTAATAATGCTGGTGTCATGATGCATCGCAATATGTTTA
ATCCGGACCCGGCCGATGTGCAGCTAATGATCAATGTTAACCTTACGTCG
CATTTCTGGACCAAGCTGGTTTTCCTACCCAAAATGAAGGAATTGCGCAA
AGGTTTCATTGTTACAATCAGTTCATTGGCAGGTGTTTTCCCATTGCCCT
ACAGTGCGACTTACACCACCACCAAATCTGGCGCCTTGGCGCACATGAGG
ACCCTGCGCATGGAGTTGGATCTGGAGAACCAGAAGGACATCCATGTGAC
CACCGTGCTGCCCAGTTTTCTGCGCACGAACAGTGATGTTACGCAGCTGA
CGCATACCATAGGATTTGGCGACGTATATCCACTGTTCACCGGAGAGGAG
GTCGCCCAGCGTATAGTGGCCGGAATGGTGAGGGGTGAGGCCGAGATCAC
CGTGCCGGGAATGGCATGCCTACTCTACCGAGTGATTCTCATACTTCCGG
CTGACTGGCAAGATCGAATTATCCTATTGTTCAGCAGAATAATTTTAAGG
AAGCCTCCGAGATGAGCATTCGGCAAGCCTTTCTAAGACCATTCGTTGGC
CGGCGGGTCCAGGTAGCGTGTCATAATCATATCATAATCATATCATATCA
CAGCTAGCTAGGAAATCTGTCATGACTAGTGCTTGGATCTACATTAAAGA
CGCCCGCGCAACG
UFO07002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13833-RA | 1076 | CG13833-RA | 57..1018 | 9..971 | 4730 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23033342..23033732 | 971..580 | 1805 | 98 | Minus |
| 3R | 32079331 | 3R | 23033935..23034113 | 509..331 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 23035338..23035507 | 178..9 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 23034227..23034384 | 333..176 | 790 | 100 | Minus |
| 3R | 32079331 | 3R | 23033794..23033870 | 585..509 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:25 has no hits.
UFO07002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:40 Download gff for
UFO07002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13833-RA | 1..966 | 9..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:31 Download gff for
UFO07002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13833-RA | 51..1018 | 2..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:46 Download gff for
UFO07002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13833-RA | 51..1018 | 2..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:46 Download gff for
UFO07002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23033342..23033729 | 583..971 | 98 | <- | Minus |
| 3R | 23033797..23033869 | 510..582 | 100 | <- | Minus |
| 3R | 23033935..23034111 | 333..509 | 100 | <- | Minus |
| 3R | 23034228..23034383 | 177..332 | 100 | <- | Minus |
| 3R | 23035340..23035513 | 2..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:31 Download gff for
UFO07002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18859064..18859451 | 583..971 | 98 | <- | Minus |
| arm_3R | 18859519..18859591 | 510..582 | 100 | <- | Minus |
| arm_3R | 18859657..18859833 | 333..509 | 100 | <- | Minus |
| arm_3R | 18859950..18860105 | 177..332 | 100 | <- | Minus |
| arm_3R | 18861062..18861235 | 2..176 | 97 | | Minus |
