UFO07004.5prime Sequence
581 bp (29 high quality bases) assembled on 2009-09-15
> UFO07004.5prime
CAATCCACATGAATTCAAATTACACAATATTAAACATCCGGGCTCACTCC
TGGGCCGAGAAGGACAATTTGGTATTTCCAACTATTACCGTTCCCGTTTC
AAATGGCTGGTTCGCCTGGTCTCCAATCGAGCAATTCCAACCACATTCTC
AAAAAGGGCCCTACGTCGTGGTGCCGCCAATCATGTCATTTCCCTTTTCT
CTTCGGTACAAAGATTCACCGCCGAAGCTGGAAAAGAAGCCCAACATTTT
TCTGGACAACATGCTCCAGTATATAGAATCTTCGTCGTACATGTACGTTA
TGGTAAGAAACAACCCTCAGGCCCGGGTAGTTGCCAATATGGTGTGCACC
ACCAAAGTCCTGGAGCTGATGATGGGTGCTCCCTACGAAAAGAAGACTGG
ATGGTCATTGGGTGTCACCCGGTATCGCAGCGCATTGTACATTTGCCGCA
TTGATGTTGAACAACCCGACCCCATTGATCAGGACAATCTGAAGAGGGCC
ATGCAATAGTTTTGGCTAAAGAATCTTCAAACCCATTGAGTTTTTGAAAA
CGGCATTAAAATGCACCCCCACAATCAATCT
UFO07004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cuff-RA | 1295 | CG13190-RA | 45..617 | 9..581 | 2295 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11886111..11886648 | 9..546 | 2165 | 93.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 4561..4596 | 227..262 | 108 | 77.8 | Plus |
UFO07004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:38 Download gff for
UFO07004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13190-RA | 45..617 | 9..581 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:25 Download gff for
UFO07004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 45..617 | 9..581 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:55 Download gff for
UFO07004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 45..617 | 9..581 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:55 Download gff for
UFO07004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11886111..11886648 | 9..546 | 93 | -> | Plus |
| 2R | 11886712..11886746 | 547..581 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:25 Download gff for
UFO07004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7773616..7774153 | 9..546 | 93 | -> | Plus |
| arm_2R | 7774217..7774251 | 547..581 | 91 | | Plus |
