UFO07008.5prime Sequence
1141 bp (1025 high quality bases) assembled on 2009-09-15
> UFO07008.5prime
CAGTCGACATGTCATGCAAGAATTGCCCTCCCTACAAGAACTCCGAATTG
GGCATCTTCTTTCCGGATTGCTTCGAACGCGTCAGCGGTCATTGCAACAA
GAAGAATCCCGGCAATGTCCAGAATCTCCACATCCTGGCCCATCGGGTGA
TGCCCAAATTCTACGATGGCATCGAACTGGACTACCTCCACCGCCTGGCA
CCCAACAAATATATCACGGCCGCCTGGGTTCTCAGTCACATCAGGCCATC
GGGTTTTCGCTTCGGCGGACTATACACGTTTCGGGTTCAAGACGATACTA
TGTACACCCCAACCATTATGGGCGACATACATCCCACTTCACTCGCTGCC
AACCTGAACATACTGTACTATCCTTTTCAATCCCTTCGCATGGAGGCCGT
GCTGCAGAAGGCCAGGGAGGCCGCGGTGGAGAGCCAGTATACGATCGAGT
GGACGAGGCCATGCGACACGTGGACCGCCAACTTTTACAATGTGCGGAAT
GAAAGTGGACGTTGCACAATGTCCGTGATGAGATCGGTATCCGCACACTG
GGCCCTCGGCGGGGAACTTCTACTGGAGTGGAACGATCCCCAGAAACTGA
CTCCGGATCTGGCGCTCGCAGCACGTTACTCCCATTATAACTATTCCTTG
GCTGCCACCGCATCGAGGCAGGGATTGGATGTCACCTACTGGCAGCGCAT
TCATCCCCATATCCAGATGGCCAATCTCTTGGCGTGGAATCGTAATACCC
GAAAGACCATTGCCACGATATGCTATCAATGGAACTTCTGGAACTCAGCC
GTCCATGGGATGTTCGATTCGGATGCCTCCGTGGGCTTCATGTGGACAAA
TACCTGACGCATTTGCCACTGCAAATGGGTTTCAGTGTAGTGATGAATCT
GCCCACAGATCGATTTGCTTTCGGCATGCGTTTTGTTTTGGACCCAGTGA
TTGAGACGTGCGAGGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCC
AGGTAGTGTCATATCATATCATATCATATCATATCACACTAGCCTAGGAG
ATCTGTCATGACTAGTGCTGATTCTCACCAATAAACGCCGCGCACGAGCG
TTGACATCCGATGGATTCGAAGTCATACTGATCTTCAACGG
UFO07008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4520-RB | 1499 | CG4520-RB | 130..1089 | 4..960 | 4710 | 99.6 | Plus |
| CG4520-RA | 1171 | CG4520-RA | 130..1089 | 4..960 | 4710 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15745171..15745494 | 302..625 | 1620 | 100 | Plus |
| 3R | 32079331 | 3R | 15744783..15745081 | 4..302 | 1480 | 99.7 | Plus |
| 3R | 32079331 | 3R | 15745551..15745776 | 625..850 | 1130 | 100 | Plus |
| 3R | 32079331 | 3R | 15745829..15745925 | 850..946 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:53 has no hits.
UFO07008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:33 Download gff for
UFO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4520-RA | 128..1103 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:02 Download gff for
UFO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4520-RA | 128..1103 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:37 Download gff for
UFO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4520-RA | 128..1103 | 1..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:37 Download gff for
UFO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15745552..15745776 | 626..849 | 99 | -> | Plus |
| 3R | 15745829..15745955 | 850..975 | 94 | | Plus |
| 3R | 15744781..15745081 | 1..302 | 99 | -> | Plus |
| 3R | 15745172..15745494 | 303..625 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:02 Download gff for
UFO07008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11570503..11570803 | 1..302 | 99 | -> | Plus |
| arm_3R | 11570894..11571216 | 303..625 | 100 | -> | Plus |
| arm_3R | 11571274..11571498 | 626..849 | 99 | -> | Plus |
| arm_3R | 11571551..11571677 | 850..975 | 94 | | Plus |
