UFO07009.5prime Sequence
1106 bp (1009 high quality bases) assembled on 2009-09-15
> UFO07009.5prime
CAGTCGACATGGTGGGAGCCATTTTCTTCGTCATCATCAAGGGCACCGTC
GATTTGGGCGGATTGGGCGTGGTTATTCAGCGGAATTTCGACACCGGACG
CATGGAGTGGCCTGAATTGACGCTGGATCCCAAGGTGCGAATGTCCATGT
TGGCAATGATGGTGGGCAACGTGGCACACAACTCGTATAACCTCGGATGC
AATCAGATCATCACCCAGCGATACCTGTCACTGCCCGGATTAAAGCAGAT
GGCCCAGTGCTCGTTCCTCTTCATTTCCGGATTGGTTCTTCTGATGGCCA
TCTGCATGTACAACGGCCTCCTGCTATCCGCAACCTACTACGACTGTGAT
CCATTGACCACGAAGTTGGCGGTGGCCAAGGATCAATTGGTTCCCCTGCT
CGTGGTGCAATCCATGAGCGCATTTCCCGGAGTTCCCGGCATGTTTGTGG
CCGGAGTGTTTAGTGCCGCCCTCAGTTCTCTGTCCACGGGCATGAATTCC
CTAGCCGCTGTTTTCCTAGAGGATTACATCAGGCCCTTGACGAGGAAGCC
GCTTACGGAACACCAAACTGCTGTTATCATGCGTGTTTGTACGGTTTTAA
TTGGAGTCATGAGTGTGGCCCTGGTTTTTGTTGTGGAGCAGATGGGCTCC
CATGTAATGCAGCTTTCCATGACCGTTGGATCGGTGGTACAGGGTCCCTT
GCTGGCTCTTTTCGTTATGGGCCTTCTGTGCCCAAGCATCAACTCAAAGA
GCGCCATAGTGGGATCCCTTTGCTCCTTCTTCTTCATGGGTTGGCTGTGC
CTATCTGCACAATTGGCCATTAATTCCGGCGAAATGCAATTCGAAAGCAA
ACCAGTTAGCGTAGAAGGCTGTGATTATGAGTTTGATCGCGACCTGCTGA
CTCCTGCCAACGTGACCATTCCCTTGACTGAATCTGGATCGCTCAGTTTC
GCGCAGGAGCTGTACCACGTCTCTTTATGTTCTATAGCGTTATGGGAAGC
CGGCGGTGGGCGTGATTACCGCCCAACTGGCCTGCTTCGTCTTGTCGCAA
TACGGCGATGATGTTGAATATGATGTTGTCATTGCATTCCCGATTCAAGA
CACTAT
UFO07009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RB | 2359 | CG8934-RA | 1149..2235 | 9..1089 | 5105 | 98.4 | Plus |
| CG42235-RA | 2561 | CG8932-RA | 1165..2023 | 25..883 | 1650 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25913870..25914255 | 364..749 | 1930 | 100 | Plus |
| 3R | 32079331 | 3R | 25913565..25913818 | 116..369 | 1255 | 99.6 | Plus |
| 3R | 32079331 | 3R | 25911814..25912198 | 364..748 | 965 | 83.4 | Plus |
| 3R | 32079331 | 3R | 25914310..25914499 | 748..937 | 935 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25913337..25913443 | 9..115 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 25914558..25914678 | 937..1056 | 360 | 91.9 | Plus |
| 3R | 32079331 | 3R | 25911254..25911344 | 25..115 | 305 | 89 | Plus |
| 3R | 32079331 | 3R | 25911404..25911640 | 116..352 | 225 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:06 has no hits.
UFO07009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:32 Download gff for
UFO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1133..2212 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:41 Download gff for
UFO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1133..2212 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:25 Download gff for
UFO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1141..2220 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:25 Download gff for
UFO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25913565..25913814 | 116..365 | 100 | -> | Plus |
| 3R | 25913329..25913443 | 1..115 | 96 | -> | Plus |
| 3R | 25913872..25914255 | 366..749 | 100 | -> | Plus |
| 3R | 25914312..25914499 | 750..937 | 99 | -> | Plus |
| 3R | 25914559..25914701 | 938..1079 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:41 Download gff for
UFO07009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21739051..21739165 | 1..115 | 96 | -> | Plus |
| arm_3R | 21739287..21739536 | 116..365 | 100 | -> | Plus |
| arm_3R | 21739594..21739977 | 366..749 | 100 | -> | Plus |
| arm_3R | 21740034..21740221 | 750..937 | 99 | -> | Plus |
| arm_3R | 21740281..21740423 | 938..1079 | 91 | | Plus |
