UFO07013.5prime Sequence
1119 bp (1006 high quality bases) assembled on 2009-09-15
> UFO07013.5prime
CAGTCGACATGACACACGAAGGAAGTAACGATTTTGTGGTGCTCACCGAC
GTGGTGCGCAAGCAATATGTGCTCTATTTGGAGCGCCAGCTGCAGGAGAA
TGTCTGCGCCTGGGCCAACCAATCCCGTAATCGCCACAAGCCCACAGCCT
GGGCGTGCATTCCCGCGAGCTTGGAGCAACTGGAGAACAAGGCGAAGAAG
GCTTCCATGGCGGCACAGATCTACCAAAGAGCCATGGTCAAAACGATAGC
TGCGGTACGTAGGAACACTCAGGAATGCCGTTTGGCCAACATTCTATTTG
AACAAATGCAGCATGCAGCTGGAGAGGATGCTGTGCCCGTAAAAACAGAC
CACCGTCTGGTGGATAAGGCCACACAAACAACCGTCATAGAAGCCCAGAA
TGGCCACATAACTCCTACGGAGGACTACGATGATGATAGCTATGAGCTGC
GTAGAAAAATCGATATGTTTCAGGCTAGTCTCGAACGGTCGGAAGTTCAG
AACGAAACGCATTGCCCACATTGCCGTAGTAAGATCATGACCCCAGAGAA
TAAGCCCCTAGCCAATCAAGAATCTCTCTACTCCGAAACCGAAGATGCTG
TGGCCCAGGAGTTGGCCATGTTGTTTGGAGAAGAGCCTACTGATCTTAAT
CATATATTCGGCATCGAACCAACTGCTGTTACTGACGATCCGCAGATCTC
GGCCATACTAAAGGAAATAGCGAATGCGGAACTACCTGAAAAAATTGAGC
ATCCACCCACATCCCCAACCGCCACACCACCAACTGGGCATCACAGCGAG
GTGGATCTTCGCCAGAGTCGCTGGCCTTGCGAACTCTACGCCCAGAGGAG
GCGTCTCAATGCCTGTTTAGTTCGCTTACTGGAAGCGGATTGGCGGTGCG
AGGACCGCTTGAGATTATAAGTTTCACCTGATTTTGGCGAAGACAGCGAT
GATGAGTTCGCAAACCAGTTATCCAGCCCGTCAATTGATTTAGTGACGAA
GTTCTGCTGTAGCTGCTGCTCGTATCGCCCATGATTGTACGTCATTGATG
TCTCCCTGAGAGACTTATCGCAATCGAATTTCTGTTCAGAAGCTAGCAGA
TGCCTGCCACTCATGCATG
UFO07013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11983-RB | 1664 | CG11983-RB | 117..1219 | 9..1097 | 5070 | 98.1 | Plus |
| CG11983-RA | 1813 | CG11983-RA | 266..1368 | 9..1097 | 5070 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9008963..9009728 | 245..1009 | 3685 | 99.6 | Plus |
| 3R | 32079331 | 3R | 9008713..9008905 | 53..245 | 965 | 100 | Plus |
| 3R | 32079331 | 3R | 9008586..9008632 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:05 has no hits.
UFO07013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:27 Download gff for
UFO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 152..1213 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:29 Download gff for
UFO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 266..1327 | 9..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:30 Download gff for
UFO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11983-RA | 266..1327 | 9..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:30 Download gff for
UFO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9008586..9008630 | 9..53 | 100 | -> | Plus |
| 3R | 9008714..9008905 | 54..245 | 100 | -> | Plus |
| 3R | 9008964..9009788 | 246..1062 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:29 Download gff for
UFO07013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4834308..4834352 | 9..53 | 100 | -> | Plus |
| arm_3R | 4834436..4834627 | 54..245 | 100 | -> | Plus |
| arm_3R | 4834686..4835510 | 246..1062 | 98 | | Plus |
