UFO07015.5prime Sequence
1152 bp (1031 high quality bases) assembled on 2009-09-15
> UFO07015.5prime
CAGTCGACATGGCTTCATCCACAGGTCTCCTGGTGGTGTCCAACATCAAG
CACCTTGGCAAATCCCTGCGAGCCATCGAGAAGTACGTGAATTCACTGTA
CATCCACCTAAATGTGGCGGGGTCAACGTCCACGACGTCACCAGTTCCAC
CGCCTCCGGTTTGGGGTCGTCTAATCTCGCAGCTGTACGCCAACAGCAGC
AGCTATGTGGGCAAGCAGTTGGACCTTCGCGTCCTTGTCTCTCCCCTACG
ACCAGGTGCCAATGGATCCCTGAAGTTGCGCCAGCCCGTCGACCTAATCT
TCTCGGATGCACATCATCCGGAGCTGTGCGACAGGCTTCGCGCGGATCTT
AACATCAGCAAGCCAACAATCTTCCTGGATGACTCGGTCATCTCGGATTT
AAGTGCCCAGCAGGATGACACCCAGCCGCCTAAGGTGTATCCCTCGGTTG
TCCTGGGCGGAACATTCGATCGCATCCATCTGGGACACAAGATATTCCTC
ACCCAGGCTGTACTGCGCACCTGCAAGCGTTTGGTTGTGGGCGTAACCAC
CTCCGCCATGACGAAGGGAAAGACGCTGCCGGACTTGATTTTGCCCGTGG
AAGAGCGCATCGCCCGGCTAAGGGAGTTCCTGGTGGACATAGATGATACG
CTGCAGTACGAAATTGTGCCCATCGATGATCCCTTTGGTCCCACGCAAGT
GGATCCTGACCTGGACATGATTGTGGTCAGTGCGGAGACGTTGCGAGGAG
GGCAGAAGGTCAACGAGGTACGCTCCGCTAAGCAACTGCGCGAGCTGGAG
ATCTTTGTGATTGACATTGTTGAAAGCAACGTGCATGATGGCATCCACGA
GACCAAAGGTCAGCTCGAGTAACACACGCATCGATCTGCTGGGAACCCGC
TGGAGAAGGCCGGAGCCACGACCACAGCTCCCGCCGCGCCCTTACATTAT
TGACTCACTGGCGCATCGCATCTGGCAGAGCAGATGGGGCGAGAGATTGA
CAACATGGGCGCCCACGTGATCGACTGCATAAGTGGCGCACGATGTTTAC
GAACCTGTCAGTGTGCTACACCCGATTGGTGCAGCACTTCGACGGTATTG
TTTCAGAACGATGTTCGCATCGATCGTCAGCTGGACAGGGTGGCGATCCA
GC
UFO07015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppat-Dpck-RA | 1711 | CG10575-RA | 36..1162 | 9..1126 | 5225 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5768193..5768759 | 575..9 | 2820 | 99.8 | Minus |
| 3L | 28110227 | 3L | 5767566..5768134 | 1126..567 | 2140 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:21 has no hits.
UFO07015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:26 Download gff for
UFO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10575-RA | 1..1138 | 9..1134 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:44 Download gff for
UFO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 28..1173 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:10 Download gff for
UFO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 28..1173 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:10 Download gff for
UFO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5767555..5768133 | 568..1134 | 96 | <- | Minus |
| 3L | 5768201..5768763 | 1..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:44 Download gff for
UFO07015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5760655..5761233 | 568..1134 | 96 | <- | Minus |
| arm_3L | 5761301..5761863 | 1..567 | 99 | | Minus |
