UFO07016.5prime Sequence
1121 bp (1015 high quality bases) assembled on 2009-09-15
> UFO07016.5prime
CAGTCGACATGCGCCTACGATATTGCTGGCTGACTCTCTCCCTTTGCCTG
CTTCTGCAACACGATCGTGCCCAGGCTGCCAACATCCTGGGTATATTTCC
CTACCGCCACATTTCACCCTTTTTTGTGATGCAGCCTTTGGTGCGGACTT
TGGCAACGAGAGGGCACAATGTGACTCTAATTACACCGATCGGAATGCCA
AACGATATCGAGGGAGTTCGACATATACGTGTTGCCCAGCTTAACGAACG
TATAAAAGAAATGCTTGAGTCTGACCAAGTTCTGGACTTTATGATTAACA
AATGGACGGAGAGCGCTCTTACGGCAAAGGCGCTCTTTAATGCCTCCAAT
GACATTCTAAGTGATCCTGGCGTTCAAAGGATGCTGCATGACAAAAGCGA
AAGTTTTGACTTGATCATCATGGAACCATCTAGTCTGGACGCCCTTTATG
GCCTGGTTGAGTTCTACAACGCCACGCTGATGGGATTGTCCAGTATACGG
ATTAACTGGCACACATACGAATTGGCAGGAAATCCAGCTCCATCAATATA
CGAACCCATTTCTCCGGTCGGCTTTTCCTTGGAAACATCATTGTTCAGTC
GCGTATATAACTGGATTCATATAATGGAAGAAAAATTGGTGAACTATTTG
ATCTTACGACCTGCTCAACTACACTTATTTCAGAAATTTTTTGGCTATTC
CGCTCAGAAAATGAATGAGTTAAGATCCAGATTCTCGTTGATGCTAATCA
ATAGCCACTACAGCATGGGTAAAGTTCGAGCCAATGCACCAAACATAATC
GAGGTGGGAGGTCTTCATCTCAGCGAGCCCCCTGAACCAAGTGATGAGGA
GCTGCAGAAATTTCTGGACAAGCCGATCACGGAGTTATTTACTTCTCGAT
GGGCAACGACATTCTGATTAAGTTTCTTCCTGAAAACATTCAGGAGCTAC
TGCTGCAGACTTTTGCTACGCTAAATGAAAGTATTTATTTGGAAGAGCGA
CTATATATATGCCTGACAATCGGATAATGTATATTGTTGTTGAACAGCCC
CTCAGCGACATATATTGACATCAATGTCGACTTTCATCACAACGGGGATA
CTGACGTGATGAGGCGTAAAG
UFO07016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16732-RA | 1758 | CG16732-RA | 26..1124 | 9..1097 | 5175 | 98.7 | Plus |
| CG16732-RB | 1749 | CG16732-RB | 26..1115 | 9..1097 | 5030 | 97.9 | Plus |
| CG10168-RA | 1856 | CG10168-RA | 912..1142 | 727..956 | 305 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23535570..23536384 | 1068..257 | 3735 | 99.1 | Minus |
| 3R | 32079331 | 3R | 23536436..23536685 | 258..9 | 1250 | 100 | Minus |
| 3R | 32079331 | 3R | 23537707..23537937 | 956..727 | 280 | 75.8 | Minus |
Blast to na_te.dros performed 2014-11-28 20:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 949..988 | 240..279 | 119 | 77.5 | Plus |
UFO07016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:25 Download gff for
UFO07016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 1..1084 | 9..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:50 Download gff for
UFO07016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 18..1109 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:25 Download gff for
UFO07016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16732-RA | 18..1109 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:25 Download gff for
UFO07016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23535529..23536382 | 259..1101 | 98 | <- | Minus |
| 3R | 23536436..23536692 | 1..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:50 Download gff for
UFO07016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19361251..19362104 | 259..1101 | 98 | <- | Minus |
| arm_3R | 19362158..19362414 | 1..258 | 98 | | Minus |
