UFO07017.5prime Sequence
1112 bp (1017 high quality bases) assembled on 2009-09-15
> UFO07017.5prime
CAGTCGACATGTCTGAGGCCACCACCAATGGACACAATGAGGTGCCAGCC
AATAATCTTCCATCTTGGCTGTCGAAAATCTCTCTGGAGAAGGCTGTTCA
GGCCCAGATCGGAGACTTTGAGAAAATCATCTCGGTAATCCCACAAAAGG
GCAGCAGTGATGGCGATAATTATTCTACACAGTTCCTTCGTTTGCTGGTG
GAAGTGGAACTGATTGACCACAGCACCAAGGATCTTTCCTTCGTTCTGAA
GGCACAGCACAGCAACGAAATGATGGCCGCCATATTGGCCAAGTTGAAGC
TCTTCCAAAAGGAGGAACAGATGTACCATAGCATTCTGCCCAAATTCGAG
AAGCTTTACGCGGATGCCGGCAAACCCATTCAGTTCGCGCCCAAAGCCTT
CAAGTTCGATCGTGACCTCGGAGTGGACTACATTCTGCTTGAGGACCTAC
ATCGCAAGAACTTCAAAAACGCCAATCGCCTGGCCGGTCTGGATCTCGAT
CACATGCATAAGGTTCTCGAGAAACTGGCCGCCTTCCATGCGGCATCCGC
CTGCTACGTGGAGCACCACGGTCTCTTTGGCGAGGAGTTCACCGTTGGCG
TTTTCAGCGAGTCCAATCGCCAGCTTCTTCAGGAGTTCAATGCATCTGGT
GCATTTCTGGCTCAGCTCAAGAAGTGGAAGAATGCGCAGAAAATTTATGA
AAAGCTGGCTGACAGCGATGACTACTTGGTGGATCGTCTGCTGCAGGATC
AGCAATACAATACCAGAGAATTCAACGTGCTCAACCATGGAGACTGCTGG
GCCAATAATGTGATGTACCAACATGATGCATTTGGAACTATTAAGGAGAC
CCTTTTCGTTGACTTTCAAGTGGAAAATACGGAAGTCCGGCCAATGATCT
GTACTACTTATATTGTCATCGGCTGCTCAGAGCTGAGACTGCCAAGTTTG
ACTACTGTGCGCTACTATTTTGATAATCTTATTGAGATCTAAGCTTCTGC
ATACCACCGACACTGCCCAAGTGAGACTGCATGCTCCTTTTCGCACGTTG
GCTGCCTTTATATGGTGATTCAGGGGTGCCGGTCGTCATGCTGCCAGAAC
GCGATGCTTATC
UFO07017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31087-RB | 1458 | CG31087-RB | 93..1200 | 8..1093 | 4915 | 97.4 | Plus |
| CG31087-RA | 1445 | CG31087-RA | 80..1187 | 8..1093 | 4915 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25311883..25312375 | 708..216 | 2465 | 100 | Minus |
| 3R | 32079331 | 3R | 25312446..25312654 | 216..8 | 1045 | 100 | Minus |
| 3R | 32079331 | 3R | 25311639..25311823 | 890..707 | 875 | 99.5 | Minus |
| 3R | 32079331 | 3R | 25311467..25311570 | 987..889 | 305 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:54:59 has no hits.
UFO07017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:24 Download gff for
UFO07017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1121 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:12 Download gff for
UFO07017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1121 | 1..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:22 Download gff for
UFO07017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31087-RA | 73..1121 | 1..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:22 Download gff for
UFO07017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25311640..25311822 | 708..889 | 99 | <- | Minus |
| 3R | 25311428..25311569 | 890..1022 | 93 | <- | Minus |
| 3R | 25311884..25312374 | 217..707 | 100 | <- | Minus |
| 3R | 25312446..25312657 | 1..216 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:12 Download gff for
UFO07017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21137362..21137544 | 708..889 | 99 | <- | Minus |
| arm_3R | 21137150..21137291 | 890..1022 | 93 | <- | Minus |
| arm_3R | 21137606..21138096 | 217..707 | 100 | <- | Minus |
| arm_3R | 21138168..21138379 | 1..216 | 98 | | Minus |
