UFO07018.5prime Sequence
1148 bp (1056 high quality bases) assembled on 2009-09-15
> UFO07018.5prime
CAGTCGACATGTCCGACAACGATGATATCGTAAACCCCAATGAGCACCTG
ATTATTCCGGATTGGATCAATGAAAAGTATTTCGAGAGTGTACTGGCCAA
GGACGAACCCGATCATGTCAAGGTCCTGAAGTTCACGGTAGTGGCGGCGA
TTCCGCCGGGCGAAAATTTCACTTCGACCATGCTAAGGGTTTATATCAAA
CTGGAAATGAAAGATGGTAGTGTCAAGACCAAAACATACATTTTCAAGAC
GATGCTGCCCGAGGAGCGAGGAGGCAGCGACATCAACGAGTTTGGCCTCT
TTCCCAAGGAGGCAATGATGTACAAGACATACCTTCCTGCATTCGAAGCC
CTATACAAGGATGTCGGTTGGGACATTCAGTTGGCGCCCAAGTGCCTGCA
CACCGAGGAGCGTGAGGGTGACATCCATTTCATCTTCGAGGATCTGTGCG
TTAAGAGGTTTAAGAACATGGATCGCACGAAGGGCCTGGACATGGAGCAC
ATGACCAAGTGCCTGCAAAAGCTGGCCGAGTATCATGCGGCCAGTGCGGT
TTACGAGGAGCTGCATGGTCCCTATCCCAGCGAGTTCAGTGAGGGATTCG
TTAAGAAGGATGTGAAAAAATTCCACGTCGATGGGTTCCAGCTGAAGGAG
AAGGCCTACAAGAAGGCAATGCTCTCGTGGGGTTTGAAAGACGCCGATAA
ATATATTAAGGCATTTCCCACTGTTAAGCAATATTGGGCGCAATGTCTTA
GTACTTTGGAATTAAATCCCGATGAATTTCATGTGCTTAACCACGGCGAC
TTTTGGTCGAGCAATCTGATGAGCAGCTATCTGCCGGACGGAACTCTCGA
GAAGCTGATACTAATCGACTTCCAGATTGTCATGTGGGGTAGTCCGGCCA
TGGACCTGCTTTTCTTTCTCACCCTCTCCCCACAACGATTTGCGCATCAG
GAGTTCGACATTTTGTAAGGATATACTGGGGACGTCTGGTCGAGTGCTTG
AGGTTTGAAGCTGAAAAGCCCTGCAAACTTCTGATCTTCAAACTCCATGA
ACAATAAGACCACTCTTTTATGCTTTCTTCAGCATCTGACACTGCATATT
CTCTTTCCACGGAAGACGCACTACTACTATCGCTATCGGAGGAGGGGG
UFO07018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31288-RA | 1377 | CG31288-RA | 58..1149 | 9..1086 | 5105 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25298701..25299205 | 716..212 | 2525 | 100 | Minus |
| 3R | 32079331 | 3R | 25298331..25298637 | 1017..717 | 1260 | 97.1 | Minus |
| 3R | 32079331 | 3R | 25299296..25299500 | 213..9 | 1025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:09 has no hits.
UFO07018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:23 Download gff for
UFO07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31288-RA | 53..1157 | 4..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:32 Download gff for
UFO07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31288-RA | 53..1157 | 4..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:30 Download gff for
UFO07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31288-RA | 53..1157 | 4..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:30 Download gff for
UFO07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25298268..25298637 | 717..1072 | 95 | <- | Minus |
| 3R | 25298701..25299203 | 214..716 | 100 | <- | Minus |
| 3R | 25299296..25299505 | 4..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:32 Download gff for
UFO07018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21123990..21124359 | 717..1072 | 95 | <- | Minus |
| arm_3R | 21124423..21124925 | 214..716 | 100 | <- | Minus |
| arm_3R | 21125018..21125227 | 4..213 | 98 | | Minus |
