UFO07023.5prime Sequence
1135 bp (1023 high quality bases) assembled on 2009-09-15
> UFO07023.5prime
CAGTCGACATGTTTCTGTCCATCGCCCCGCCCCTAATGGACTTCGAGGAC
GAGCTGCTCTGGATAAACCAGTCGAACAGCGACAAGGTGGAGATCATCTA
CGACAAGTCCAACTACATTACCCCCAACATAAAGCACCTCATCGAGCAGG
CTTTTCTCCAGCCACTCAGCCTCCAGAACCAGCACATCCTCTTCGACGAC
CTGCTGAAGCAGAACACGGACATTGCGCGCCAATATGGACTGACCCCGGA
CAAGCTACCTCTGCTCGTGGAAAGCAATCCTCTCATCTCCATTGAGATCT
TGCTAAGACTGATGACGACCTCCGACATAACTGAATACTTCAACGTGTTG
GTCAACATGGACATAACACTTCACTCCATGGAGGTGGTCAACCGACTAAC
CACCTCCGGACCTTTGCCCACTGAGTTTATTCACCTATACATCAGCAATT
GCATCTCGACTTGCGAAACAGTCAAGGACAAGTACATGCAGTCTCGCCTG
GTGCGACTCGTTTGCGTATTTCTGCAGTCCTTGATTAGGAACAAGATTGT
GAACGTTAGGGAACTATTCATTGAAATCGAAGCCTTCTGCGTGGGTTTCA
GCAAAATCAAGGAGGCTGCTACCCTGTACCGGCTTATCAAACACTTGGAA
ACTGGGGAAAGCGCTCTGTCGTCCAACTCCCTAGCTAAGGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAATTACGCCCGCCCTGCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCGACATGCAGCATCACAAACGGCAT
GATGACCTGATCGCAGCGCATCAGCACTTTTCGCCTTGGCGTATAATATT
TGCCCATGTGAAACGGGGGCGAAGAGTGTCATTTGCACGTTATCGAACTG
GTAACTCCCAGATGGCTGACAAAACAATTCTCATA
UFO07023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Not11-RC | 1022 | CG13567-RC | 275..956 | 8..689 | 3410 | 100 | Plus |
| Not11-RB | 815 | CG13567-RB | 68..749 | 8..689 | 3410 | 100 | Plus |
| Not11-RA | 875 | CG13567-RA | 68..621 | 8..561 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24037395..24037641 | 254..8 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 24036974..24037141 | 561..394 | 840 | 100 | Minus |
| 2R | 25286936 | 2R | 24037201..24037342 | 394..253 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 24036786..24036915 | 689..560 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:49 has no hits.
UFO07023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:30 Download gff for
UFO07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13567-RB | 153..840 | 1..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:58 Download gff for
UFO07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13567-RB | 62..749 | 1..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:41 Download gff for
UFO07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Not11-RB | 62..749 | 1..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:41 Download gff for
UFO07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24036786..24036914 | 561..689 | 100 | <- | Minus |
| 2R | 24036975..24037140 | 395..560 | 100 | <- | Minus |
| 2R | 24037201..24037340 | 255..394 | 100 | <- | Minus |
| 2R | 24037395..24037644 | 1..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:58 Download gff for
UFO07023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19924309..19924437 | 561..689 | 100 | <- | Minus |
| arm_2R | 19924498..19924663 | 395..560 | 100 | <- | Minus |
| arm_2R | 19924724..19924863 | 255..394 | 100 | <- | Minus |
| arm_2R | 19924918..19925167 | 1..254 | 98 | | Minus |
