UFO07025.5prime Sequence
1099 bp (998 high quality bases) assembled on 2009-09-15
> UFO07025.5prime
CAGTCGACATGGGAAAAGGCGTTAACACAGTCTTTAGGCCAGCAGAATGG
GACAATTCGGAGGAGAAGGAAAGACCCAAGTTGGAGTACTTGGTGACCAA
CAAGAAGACTCCGCCGGTTGAACTCTACCTCACGGCATTCGCCTCCGCCT
GCAGTGCCGAGATTGTGGGCTATCCCTTCGATATGTGCAAGACCCGAATG
CAGATCCAGGGCGAGATCGCGAGCAGGGTGGGTCAGAAGGCCAAGTACCG
AGGTCTGCTGGCCACTGCCATGGGCATCGTCAGGGAGGAGGGTCTGCTGA
AGCTCTACGGTGGCATATCCGCCATGCTGTTCCGCCACTCGCTCTTCAGT
GGCATCAAAATGCTGACCTACGACTATATGCGTGAGAAGATGATCGTGCC
CGACGAGGACGGCAGGCCGCAGCTATCCTTCCTGGGATCCTGCATCAGTG
GCGTCTTAGCCGGCGCAACTGCCAGCGTACTAACGAATCCCACCGAGCTG
ATTAAGATCCAAATGCAAATGGAGGGACAGCGGCGTCTAAGGGGCGAGCC
TCCACGCATTCACAATGTGCTCCAGGCCCTGACTTCCATTTACAGAACGG
GTGGTGTGGTGGGTCTCTGGAAGGGAACTGTTCCAAACACATGGCGCTCG
GCACTCGTGACCATAGGGGACGTCAGCTGCTATGACTTTTGCAAACGCTT
TCTGATTGCCGAGTTCGATCTGGTGGATAACCGAGAAGTGCAGTTCGTAG
CCGCCATGACCGCCGGCGTAGCGGATGCCATTCTGAGCTTGCCAGCGGAC
GTGGTCAAGTCCCGGATCATGAATCAGCCAACCGATGAGCAGGGACGCGG
CATTCATTACAAGGGCTCCCTGGATTGCTTAAGTAGGTTGGTTAGAGAGG
AGGGCTTTTTGGCCATGTACAGGATTCATTCCATATTGGATGCGTGTCGG
ACCTGCTCGTGTGTCTGGATGACTCGAGCAGATAGACGGTTCGTGCAGCG
AGTACGCAGCTTCTAGACATCGTTTGGCGCGCGGGCCAAGTAGTGGTCAT
ATCATATCATATCATATCCTATCCACTAGTCTAGGATCTGGCATGACAT
UFO07025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1098 | CG18340-RA | 44..1047 | 9..1001 | 4765 | 98.9 | Plus |
| Ucp4B-RC | 1088 | CG18340-RC | 44..1037 | 9..1001 | 4605 | 97.9 | Plus |
| Ucp4B-RB | 793 | CG18340-RB | 44..702 | 9..667 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5969902..5970560 | 9..667 | 3295 | 100 | Plus |
| 2L | 23513712 | 2L | 5970627..5970920 | 665..956 | 1405 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:36 has no hits.
UFO07025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:19 Download gff for
UFO07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 20..990 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:42 Download gff for
UFO07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1014 | 9..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:59 Download gff for
UFO07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1014 | 9..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:59 Download gff for
UFO07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5969902..5970559 | 9..666 | 100 | -> | Plus |
| 2L | 5970629..5970941 | 667..973 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:42 Download gff for
UFO07025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5969902..5970559 | 9..666 | 100 | -> | Plus |
| arm_2L | 5970629..5970941 | 667..973 | 98 | | Plus |
