UFO07026.5prime Sequence
1125 bp (1023 high quality bases) assembled on 2009-09-15
> UFO07026.5prime
CAGTCGACATGCTGAAGTACATGATTTGCGCCATCGTTGTGGGCGCCAAA
AAGAGCACATCCTCTAAGTATAATGGATCCTACGACTACGACCTTATTGT
GATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCAGTCCTCA
ATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCCCACTCTG
GGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCTGCATTCC
CAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTCCATGAGG
CGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGACTGGCAC
AAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACTGGGTGAC
CCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGACTGGGCT
CCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGGCGAGCGC
ACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGACCACGTTA
TCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGATGATCTGT
TCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGCTGGCTAC
ATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACGAGCCCAC
TGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAGATGGCCG
AGCTGGTGGCAGCCTCGATGGAGGAGCGTGCATTCCCTTCCTCCGCAAGA
CGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGCTCGTGAAG
TACAAGAACGTGAGACCGGCGAGGAGGCCGAGGATGTTTACGACACCGTT
CTGTGGCCATCGGCCGCAAGGGTCTGGTGACGATCTGAACCTGCCCATGC
CGGCGTGACTGTGCAGAAGACAGATTCCAGTGACTCCCAGGAGCTACCAT
GTGCAAACATCTACGCTGTCGCGATATCATCTATGGCAGCCAGAGCTGAC
GCCCCGTCGCCCGTTTGCTACCGTTGCTGCCGCGCCTGTACGGAGATCTA
CCCACGCCATGGACATACAAGAAAG
UFO07026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-1-RC | 2108 | CG2151-RC | 242..1373 | 8..1121 | 5040 | 97.6 | Plus |
| Trxr-1-RB | 2277 | CG2151-RB | 478..1542 | 75..1121 | 4705 | 97.5 | Plus |
| Trxr-1-RA | 2003 | CG2151-RA | 204..1268 | 75..1121 | 4705 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8246093..8246446 | 75..428 | 1755 | 99.7 | Plus |
| X | 23542271 | X | 8246808..8247226 | 649..1054 | 1450 | 96.4 | Plus |
| X | 23542271 | X | 8246510..8246736 | 422..648 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 22550410..22550764 | 80..434 | 715 | 81.3 | Plus |
| 3L | 28110227 | 3L | 22550864..22551129 | 528..792 | 440 | 78.6 | Plus |
| X | 23542271 | X | 8244430..8244498 | 8..76 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:51 has no hits.
UFO07026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:18 Download gff for
UFO07026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 35..1179 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:17 Download gff for
UFO07026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 36..1180 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:03 Download gff for
UFO07026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-1-RC | 233..1377 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:03 Download gff for
UFO07026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8246094..8246439 | 76..421 | 100 | -> | Plus |
| X | 8246510..8246736 | 422..648 | 100 | -> | Plus |
| X | 8244421..8244497 | 1..75 | 94 | -> | Plus |
| X | 8246808..8247302 | 649..1125 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:17 Download gff for
UFO07026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8138454..8138530 | 1..75 | 94 | -> | Plus |
| arm_X | 8140127..8140472 | 76..421 | 100 | -> | Plus |
| arm_X | 8140543..8140769 | 422..648 | 100 | -> | Plus |
| arm_X | 8140841..8141335 | 649..1125 | 94 | | Plus |
