UFO07027.5prime Sequence
1085 bp (985 high quality bases) assembled on 2009-09-15
> UFO07027.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGAAC
GCACCGATAGCGAGATAGTCGTCACTTGGTCCACGCGCAGCCTGCCGCCG
GATCAGGAAGTGGGTGCGGTCAGCGTGGTGGAGTACGGTCAACTGGTAGA
CGGACAGGTCAGGCTCACCCAACAGGCCCGGGGAAAGGCTACTAAATTCG
TGGACGGCGGTCACAAGCAGGCCACGCAGTTCATCCACAGGGTGACGCTT
AGGGACCTGGAGCCAAATGCCACATACTCTTACCATTGCGGTAGCGATTT
TGGCTGGTCGGCCATCTTCCAGTTTCGCACAGTGCCCTCGGCATCCGTTG
ACTGGTCGCCATCGCTGGCTATCTACGGGGATATGGGCAATGAGAATGCC
CAATCCCTGGCCCGATTGCAGCAGGAGACGCAGCGCGGCATGTACGATGC
CATCATCCATGTGGGTGACTTCGCCTACGACATGAACACGAAGAATGCTC
GCGTGGGGGATGAGTTTATGCGGCAGATCGAAACGGTGGCTGCCTACCTG
CCATACATGGTGGTTCCCGGCAATCACGAGGAGAAGTTCAACTTCTCGAA
CTATCGTGCCCGCTTCAGTATGCCGGGAGGTACGGAGAACATGTTCTACA
GCTTCGATCTGGGACCCGTGCACTTCGTGGGCATTAGCACGGAGGTCTAC
TACTTTCTCAACTATGGTTTAAAGCCGCTGGTATTCCAGTTCGAATGGTT
GCGTGAGGATCTGGCCAACGCCAATCTGCCAGAGAATCGGAACAAGCGTC
CGTGATCATCTTGTACGGTCATCGACCCATGTACTGCAGCACGAGACGAC
ATGACTGCACCCACTCAGAGACCCTCCCGCGGGTGGCTGCATTTGTACCC
ATGTTCGATGAGCCGCTGCTTACGAGTCGGCGTGACGTGCCATCGCGCAC
GAGCACTCCTACGAAAGAACTCTGTCGTACGATTA
UFO07027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RB | 2196 | CG1637-RB | 246..1327 | 9..1074 | 4915 | 97.8 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..1330 | 9..1074 | 4875 | 97.5 | Plus |
| CG1637-RC | 1708 | CG1637-RC | 660..1148 | 453..940 | 965 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10875241..10875588 | 688..341 | 1740 | 100 | Minus |
| X | 23542271 | X | 10874869..10875170 | 986..689 | 1265 | 97.7 | Minus |
| X | 23542271 | X | 10875801..10875998 | 343..146 | 990 | 100 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10871530..10871764 | 687..453 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10871213..10871465 | 940..689 | 390 | 77.9 | Minus |
| X | 23542271 | X | 10873137..10873374 | 687..450 | 320 | 75.6 | Minus |
| X | 23542271 | X | 10872802..10873030 | 941..714 | 225 | 74.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:58:51 has no hits.
UFO07027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:17 Download gff for
UFO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 247..1336 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:11 Download gff for
UFO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 238..1327 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:42 Download gff for
UFO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RB | 238..1327 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:42 Download gff for
UFO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10874769..10875170 | 689..1074 | 94 | <- | Minus |
| X | 10875241..10875587 | 342..688 | 100 | <- | Minus |
| X | 10875803..10875996 | 148..341 | 100 | <- | Minus |
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:11 Download gff for
UFO07027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10768802..10769203 | 689..1074 | 94 | <- | Minus |
| arm_X | 10769274..10769620 | 342..688 | 100 | <- | Minus |
| arm_X | 10769836..10770029 | 148..341 | 100 | <- | Minus |
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
