UFO07029.5prime Sequence
1117 bp (1010 high quality bases) assembled on 2009-09-15
> UFO07029.5prime
CAGTCGACATGTGTTGTAAGTCGTGCGAAGAACAACCAGCATCATGCTGC
TCGACTTTCTATGCATTTTTCTGCATGGGAGCAGGATTCTTTATGTTTAG
CTTCTCGCTGCACAATGTAATTATATCAGAAGAGTCTATTACCATTATGG
ATTGGTTTCTGCACATACATGGCACTGATTTGACGGAAAAACAGCTTTTG
ATATTGTACGCTTCGGATTTAATTTTTGCCTTTACGTATGTCCTCGCAGG
AGTTTTGCTAGCTTGGGGAATCAAAAGCAAAACAAAGGGATTTATTAAAG
CTGGAAAGATCTTAAGCTATTTCTTTCCCATATATAATATTGTTTATGTA
TTTCCATTAGTTATACATATTGGCTGTGTGATAAAATTATGCAGATATCT
AAAGGAAAACTTTGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACC
CTTTAGGGAATAGGCAGGTTTCACGTACACGCACATCTGCGATATATGTG
TAGAACTGCGAAATCGTCGTGTATCACTCCAGAGCGATGAACGTTTCAGT
TGCTCATGAAAACGTGTACCAGTGACCTATCCATATCACAGCTCACCGTC
TCATGCATACGAATCGATGACATCATCAGCGCAGATGTAATAGCGATAAC
TGCTCTTCTACGGCTGA
UFO07029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32192-RB | 992 | CG32192-RB | 104..511 | 9..416 | 2040 | 100 | Plus |
| CG32192-RC | 983 | CG32192-RC | 104..502 | 9..416 | 1895 | 97.8 | Plus |
| CG42393-RA | 1142 | CG42393-RA | 400..513 | 300..413 | 225 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18040420..18040689 | 9..278 | 1350 | 100 | Plus |
| 3L | 28110227 | 3L | 18040763..18040844 | 279..360 | 410 | 100 | Plus |
| 3L | 28110227 | 3L | 18040925..18040983 | 358..416 | 295 | 100 | Plus |
| 3L | 28110227 | 3L | 18043207..18043266 | 300..359 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:57 has no hits.
UFO07029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:12 Download gff for
UFO07029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32192-RB | 94..517 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:48 Download gff for
UFO07029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32192-RB | 94..517 | 1..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:08 Download gff for
UFO07029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32192-RB | 94..517 | 1..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:08 Download gff for
UFO07029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18040410..18040689 | 1..278 | 98 | -> | Plus |
| 3L | 18040763..18040844 | 279..360 | 100 | -> | Plus |
| 3L | 18040928..18040983 | 361..416 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:48 Download gff for
UFO07029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18033510..18033789 | 1..278 | 98 | -> | Plus |
| arm_3L | 18033863..18033944 | 279..360 | 100 | -> | Plus |
| arm_3L | 18034028..18034083 | 361..416 | 100 | == | Plus |
