UFO07033.5prime Sequence
1126 bp (1041 high quality bases) assembled on 2009-09-15
> UFO07033.5prime
CAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTTCCACCAAG
CCCGAGCTGCCAGAAGATGGAGTTCCTCGTTTCTTTTCCATGGCATTCTG
CCCCTTCAGCCACCGAGTTCGTCTGATGCTGGCCGCCAAACATATTGAAC
ATCATAAGATCTACGTCGATTTGATTGAGAAGCCTGAATGGTACAAGGAT
TTCAGTCCTCTGGGCAAAGTGCCAGCCCTGCAGCTTACTGGGGTGAAGGA
CCAACCGACCCTCGTGGAGTCGCTCATCATAGCAGAGTACTTGGACCAGC
AATATCCCCAGACGCGACTCTTTCCCACGGATCCGCTTCAGAAGGCGCTG
GACAAGATTCTAATCGAACGTTTTGCTCCAGTGGTCAGTGCCATTTATCC
TGTGCTGACTTGTAATCCCAACGCTCCGAAAGATGCCATACCGAACTTCG
AGAATGCCTTGGATGTTTTTGAAGTGGAGTTGGGCAAAAGAGGAACGCCC
TACTTTGCCGGCCAGCACATTGGAATCGTGGACTACATGATTTGGCCTTG
GTTCGAACGTTTTCCCAGCATGAAGATCAATACGGAGCAAAAGTATGAGC
TGGATACAAAACGATTTGAGAAGCTGCTCAAGTGGCGCGATTTGATGACC
CAGGATGAGGTTGTGCAGAAGACAGCTTTGGATGTCCAGTTGCATGCTGA
GTTCCAGAAATCGAAGACCCTTGGAAATCCCCAGTACGACATTGCCTTCA
AGGGTACACCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAAATACGCCCC
GCCCTGCACTCATCGCAGTACTGTTGTATCATAGCATCTGCGACTGGAGC
AATCCAACCGCATGATGACTGATCGCAGCGGCATCAGCACTTGTCGCTGC
TATAAATTTGCATGTGAAACGGGACG
UFO07033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO2-RA | 932 | CG6673-RA | 71..823 | 9..761 | 3765 | 100 | Plus |
| GstO2-RB | 912 | CG6673-RB | 71..472 | 9..407 | 280 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8521732..8522319 | 626..39 | 2940 | 100 | Minus |
| 3L | 28110227 | 3L | 8521538..8521673 | 761..626 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:44 has no hits.
UFO07033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:10 Download gff for
UFO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6673-RA | 70..822 | 9..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:33 Download gff for
UFO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO2-RA | 71..823 | 9..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:37 Download gff for
UFO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO2-RA | 71..823 | 9..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:37 Download gff for
UFO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8521538..8521672 | 627..761 | 100 | <- | Minus |
| 3L | 8521732..8522318 | 40..626 | 100 | <- | Minus |
| 3L | 8523401..8523431 | 9..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:33 Download gff for
UFO07033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8514638..8514772 | 627..761 | 100 | <- | Minus |
| arm_3L | 8514832..8515418 | 40..626 | 100 | <- | Minus |
| arm_3L | 8516501..8516531 | 9..39 | 100 | | Minus |
