UFO07036.5prime Sequence
1104 bp (1024 high quality bases) assembled on 2009-09-15
> UFO07036.5prime
CAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACGTCAGAATC
CTATGGCCCCTTATTGAAACAAGGTCAGCAGGTAAATGTAAATTACATAA
CCCGAGGCCGACTCCAAACCGTAACATTGCGGCAGCAAAATTGATCGTGA
CACTCAGATTGCTCTTATCCTGTTGCAGTGGAGGACACCAGCGCAGCTTC
TCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAAAAA
ACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGGACA
TGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCGTAT
GTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGCGGA
CCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGGTGA
CCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGTCTG
TTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGACAT
ACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGTCCC
TCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGATCAA
ATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCCCTC
AATCCGCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCAAG
CGAGCTCGATATCAAATTACGCCCCCGCCCTGCACTCATCGCAGTACTGT
TGTAATTCATTAGCATCTGCGACATGCAGCATCAAAACGCATGATGACTG
ATCGCAGCGCATCAGCACCTGTCGCTGCCTTTAATATTTGCCATGGTAAC
GAGC
UFO07036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9410-RB | 930 | CG9410-RB | 71..796 | 9..734 | 3630 | 100 | Plus |
| CG9410-RE | 833 | CG9410-RE | 140..699 | 175..734 | 2800 | 100 | Plus |
| CG9410-RA | 891 | CG9410-RA | 200..757 | 177..734 | 2790 | 100 | Plus |
| CG9410-RE | 833 | CG9410-RE | 71..143 | 9..81 | 365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6669491..6669942 | 283..734 | 2260 | 100 | Plus |
| 2R | 25286936 | 2R | 6669160..6669434 | 9..283 | 1375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:21 has no hits.
UFO07036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:22 Download gff for
UFO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9410-RD | 583..1308 | 9..734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:28 Download gff for
UFO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9410-RB | 71..796 | 9..734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:45 Download gff for
UFO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9410-RB | 71..796 | 9..734 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:45 Download gff for
UFO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6669160..6669434 | 9..283 | 100 | -> | Plus |
| 2R | 6669492..6669942 | 284..734 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:28 Download gff for
UFO07036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2556665..2556939 | 9..283 | 100 | -> | Plus |
| arm_2R | 2556997..2557447 | 284..734 | 100 | == | Plus |
