UFO07037.5prime Sequence
1112 bp (1001 high quality bases) assembled on 2009-09-15
> UFO07037.5prime
CAGTCGACATGTCGCTCGTCATCCCAGAGAAGTTCCAGCACATCCTGCGT
ATCATGAATACGAACATCGACGGCAAGCGCAAGGTTGGCATCGCCATGAC
CGCCATCAAGGGAGTGGGTCGCCGCTACTCCAACATTGTGCTGAAGAAGG
CCGATGTCGATCTTACCAAGCGCGCCGGTGAGTGCACCGAGGAGGAGGTC
GACAAGGTGGTGACCATCATCTCGAACCCTCTGCAGTACAAGGTGCCCAA
CTGGTTCCTCAACAGGCAGAAGGACATCATCGATGGCAAGTACTGGCAGC
TGACCTCCTCCAACTTGGACTCGAAGCTGCGTGACGATCTGGAGCGTCTG
AAGAAGATCCGCTCCCACCGTGGTCTGCGTCACTACTGGGGCCTCCGTGT
GCGTGGCCAGCACACCAAGACCACCGGTCGTCGTGGTCGCACCGTGGGTG
TGTCCAAGAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAC
CTCACCCAGGGATGGCTGAGACGAAAAACATATTCTCATAAACCCTTTAG
GAAATAGGCCAGGTTTTCACGTACACGCACATCTGCGAATATATGGTGTA
GACTGCGAATCGTCTGGTATTCACTCAGAGCGATGAACGTTCAGTTGCCT
CATGAAACGGTACAGTGAACCTATCCCATATACCAGGCCACGTCTTCATG
AATCGAATCGGG
UFO07037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS18-RA | 583 | CG8900-RA | 39..494 | 9..464 | 2280 | 100 | Plus |
| RpS18-RB | 606 | CG8900-RB | 62..517 | 9..464 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20264491..20264759 | 196..464 | 1345 | 100 | Plus |
| 2R | 25286936 | 2R | 20264246..20264434 | 11..199 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:22 has no hits.
UFO07037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:13 Download gff for
UFO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS18-RA | 34..505 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:01 Download gff for
UFO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS18-RB | 55..526 | 1..477 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:50 Download gff for
UFO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS18-RB | 55..526 | 1..477 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:50 Download gff for
UFO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20264493..20264759 | 198..464 | 100 | == | Plus |
| 2R | 20264236..20264432 | 1..197 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:01 Download gff for
UFO07037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16151998..16152264 | 198..464 | 100 | == | Plus |
| arm_2R | 16151741..16151937 | 1..197 | 97 | -> | Plus |
