UFO07039.5prime Sequence
1133 bp (1021 high quality bases) assembled on 2009-09-15
> UFO07039.5prime
CAGTCGACATGAAAAACCAAAACCTTCGCTGCATCGTAACCGATTGTTAT
AAGAGTGGTAAACAGGATAGTAGCTCCATGTACAAGTTCCCCATAAATCC
GGTTGTCCGGCAGAAGTGGTTGGATAATATTGCGGACATAAAAGATATTA
ACTTGTTCAATAGTCGGGTGTGTAGGCGGCACTTTGAGACACAATGTTTT
GGCAAGACCAAGGTGTTTTCCTGGGCAGTTCCCACACTTTTCTTGAATAC
AAAAGAGGTAGTGCACCAGGTCAGTAAGCCAAGCAGGAACTCCTTCATTC
GCAGATGCAGCGTCAGGAACTGCTCCTCACGATCTCCTCCAGAACGACTG
CACTTCTTTCCCTCGAATCCCGAAATGCGCAAGGCATGGATGGAAATATG
TCGGCTTACGGTGGACAACAAGTGGCTGTTTATTTGCGGCAGACACTTTC
GCCGGACTTATCTGCCAAACAAGGGAAACCTTAGAAAGGACGCCATTCCA
GAGTTCCACTTAGGAACGGAGGAGGAGGATCCCCTCGGAAAGAGCATCAA
AAGTATGAAATCATGTGCTAATAGAAGTAATATCAGTTTCAAGAGCGAGG
ATTCTGGCATTGACGAGGAAAGCTTTAAGGAGAGTAAGCCTCATAATAAT
CCATGCGCCAATTGCCTTGATCTCCAACAGCAATTGGCAGCAGCTCATCT
TCGCATTCAGCAACTTGAGGAAAGAAGGCAAGAGGAGACAGACAGTGATG
ATGATGAGGAGGGGGAGGAGGAGGAGCACATATTCATGCTAATGAAGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTAAGTGTCATAATC
ATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAATCCAGATGAGTTCTGAGTCATTACTGATCTATCAACAGAGT
CCAGCGAGCTCGATTATCAAATACCGCCCCGCCCTGCCACTCATCGCAGT
ACTTGTTGTATCATAGCAATCTGCGACTGAAGCCATCAAAACGGCATGAT
GACTGATCGCCCAGCCGCATCAGACCTGTCCTT
UFO07039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14860-RB | 1603 | CG14860-RB | 52..840 | 9..797 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14895133..14895683 | 247..797 | 2755 | 100 | Plus |
| 3R | 32079331 | 3R | 14894835..14895072 | 9..246 | 1175 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:54 has no hits.
UFO07039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:12 Download gff for
UFO07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14860-RB | 52..843 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:23 Download gff for
UFO07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14860-RB | 52..843 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:25 Download gff for
UFO07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14860-RB | 52..840 | 9..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:25 Download gff for
UFO07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14894835..14895072 | 9..246 | 99 | -> | Plus |
| 3R | 14895133..14895683 | 247..797 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:23 Download gff for
UFO07039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10720557..10720794 | 9..246 | 99 | -> | Plus |
| arm_3R | 10720855..10721405 | 247..797 | 100 | == | Plus |
