UFO07040.5prime Sequence
1113 bp (1025 high quality bases) assembled on 2009-09-15
> UFO07040.5prime
CAGTCGACATGCCTTTTAGCAATGAAACGGAAATGAGCCAATGTTCCAAT
GCGAAACGTAGAGTAAACGATCCGTTGACTGGACCAAAAAACTGCAGTAC
TTCGTCCACAGACTCGGGCGTTATACTAAACGATAATGTGGCGGCATTCC
GGCCGGAGAAGGAGACCAAAGATCGGGGGACGGGCGAAGGGCAGTTCCAA
TCGAAATCGGAAGAGAAAACGGAATCCAAGCGTATCAGCGTTGAGCACAC
TGTCAATATAACAACGGAAAATGTTGGAAAGACATCTTCGCCGGCGGTTT
CCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATAATGCCATC
GACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAGGATTATAC
GGTCCAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAGTTCACACC
TGCGCGACCTTAACCAGGGTCTAACGGTGATCAGTCGCCATGTGGCGCCA
GGTGAGGCGGCAGTACCACCACCCAATCCCCTGGAAGCTGGCATTGTGGC
CAAGCAAATACTGAACGGTAATCTGGCCGTGGCCACGCCCACATCGCCGG
CGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCAACTCCACA
GATGTGACGTTCGGTGATAAGCATTTCTACGAGGGACCCGTGACGATACA
ACAGTTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGAGGGACCAG
CTGGTGGACAGGATAACCCCGCATTCAATGGTGGTCCCAGCACGAATGGA
AGTGCGCCGGGCTCCAAACACGAAGATCCGGCGCAAACCCCACCAATTTG
TCCTTTTCTGCCCAACACTGTCGGACGCAAGGCCGTCACAGTTACAGTGT
TTTTGTAACTTTACCTTCCTGCTGGGTATCGTACTGGCCACACCACAAAT
CTCTTCGGAAGACGTTGACCAAACGGACTTGATGTCATCGATATAGCACA
TGTGATCTAAAGTAGCGAGTGGGCGAGACTGCAGAGGATGTGAATGCCCA
CAGTGGCATCATCGGTGTCATCTCGCCACCGCCGCTGAGTGCATCCAGGA
ACGTCGCAGGTAA
UFO07040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RD | 1781 | CG4432-RD | 216..1327 | 4..1089 | 4905 | 97.4 | Plus |
| PGRP-LC-RA | 1876 | CG4432-RA | 311..1422 | 4..1089 | 4905 | 97.4 | Plus |
| PGRP-LC-RC | 2579 | CG4432-RC | 311..1287 | 4..975 | 4760 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9342323..9343130 | 4..811 | 4040 | 100 | Plus |
| 3L | 28110227 | 3L | 9344899..9345052 | 810..960 | 620 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:30 has no hits.
UFO07040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:11 Download gff for
UFO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RD | 212..1239 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:03 Download gff for
UFO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RA | 307..1334 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:32 Download gff for
UFO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RA | 307..1334 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:32 Download gff for
UFO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9344900..9345067 | 811..973 | 97 | -> | Plus |
| 3L | 9342319..9343129 | 1..810 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:03 Download gff for
UFO07040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9335419..9336229 | 1..810 | 99 | -> | Plus |
| arm_3L | 9338000..9338167 | 811..973 | 97 | -> | Plus |
