UFO07042.5prime Sequence
1137 bp (1036 high quality bases) assembled on 2009-09-15
> UFO07042.5prime
CAGTCGACATGGAAACGGAGTCTCTGAACCGCAAGAACTCCTCGCGGAAG
AGTTCAATCGTGAATGGGAATGGAGATGCCTCTGCCAAGTTGACCAACGG
CGATGGAGATGGAGGCGGAGACGGAGGCGGAGAGGTGACTCTGAAGGCCA
AGATGAGCCTGCTCAATGGATGCACCGTCATAGTGGGCTCCATCATCGGA
TCGGGCATCTTTGTATCGCCCACGGGAGTGCTGATGTACACGGGCAGTGT
CAACCTGGCCCTCATCGTTTGGGTCATTTCCGGCCTTTTCTCGATGGTGG
GTGCCTACTGCTATGCGGAGTTGGGAACGATGATCACCAAGTCGGGTGCT
GATTACGCATACATCATGGAGACTTTCGGACCCTTCATGGCCTTCATCCG
ACTCTGGATCGAGTGCATGATCGTGCGACCCTGCTCCCAGGCCATCGTAG
CCCTCACCTTCAGTACCTACGTCCTGAAGCCCTTCTTCCCGGAGTGCACT
CCTCCGGAGGACTCGGCCCGCCTGCTAGCCGTCTGTTGCATCCTTGTGCT
AACCCTAATCAACTGCTGGGACGTAAAATGGGCGACCGCTGTGCAGGATA
TCTTTACATATGCGAAACTGCTGGCCCTGTTTATCATCATTGCCACTGGC
GTTTACCAACTTTACCTCGGCAACACGCAATACTTTACGTTTGAGAATAC
GGACACGAAAGTGACCTCCATCGCGCTGTCCTTCTACTCCGGTCTGTTTG
CCTACAACGGATGGAATTACTTGAACTTCATCATTGAGGAGCTGAAGGAT
CCCGTCAAGAATCTGCCCCGCGCCATCGCCATCAGTTGCACCCTGGTGAC
CATTGTCTATGTCATGGCGAATGTATCCTTCTACACCATCCTGTCGCCGG
ATGAGGTCATGGGCTCTCGGCCGTGGCGGTGACCTATGCGGAGCGGGCCT
TCGGCATGCTGGCTGACATTCAGTTTTGTGGCCTTGTCTACGTTTGGAGC
AGTGACGGCATTCTGCTGACCTCCTCCGACTCTTCTACGCGGAGCACACG
GCAGATGCCCGAGATCCTCACCATGATCAGATCGAGATCCACCACTCCGC
GGTTTGCATGGGCCTTCTATCGGTTGACTACGTTCGG
UFO07042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1607-RD | 3020 | CG1607-RD | 262..1399 | 8..1122 | 5120 | 97.7 | Plus |
| CG1607-RC | 2894 | CG1607-RC | 136..1273 | 8..1122 | 5120 | 97.7 | Plus |
| CG1607-RB | 2956 | CG1607-RB | 136..1273 | 8..1122 | 5120 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31387110..31387405 | 8..303 | 1465 | 99.7 | Plus |
| 3R | 32079331 | 3R | 31387933..31388180 | 296..543 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 31389380..31389581 | 763..963 | 960 | 99.5 | Plus |
| 3R | 32079331 | 3R | 31389169..31389315 | 618..764 | 735 | 100 | Plus |
| 3R | 32079331 | 3R | 31389037..31389110 | 544..617 | 370 | 100 | Plus |
| 3R | 32079331 | 3R | 31389660..31389771 | 974..1078 | 270 | 91.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:11 has no hits.
UFO07042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:10 Download gff for
UFO07042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RB | 128..1237 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:56 Download gff for
UFO07042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RB | 129..1238 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:21 Download gff for
UFO07042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1607-RB | 129..1238 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:21 Download gff for
UFO07042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31387934..31388180 | 297..543 | 100 | -> | Plus |
| 3R | 31389037..31389110 | 544..617 | 100 | -> | Plus |
| 3R | 31389169..31389314 | 618..763 | 100 | -> | Plus |
| 3R | 31389381..31389595 | 764..973 | 97 | -> | Plus |
| 3R | 31387103..31387398 | 1..296 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:56 Download gff for
UFO07042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27212825..27213120 | 1..296 | 98 | -> | Plus |
| arm_3R | 27213656..27213902 | 297..543 | 100 | -> | Plus |
| arm_3R | 27214759..27214832 | 544..617 | 100 | -> | Plus |
| arm_3R | 27214891..27215036 | 618..763 | 100 | -> | Plus |
| arm_3R | 27215103..27215317 | 764..973 | 97 | -> | Plus |
