UFO07044.5prime Sequence
1120 bp (992 high quality bases) assembled on 2009-09-15
> UFO07044.5prime
CAGTCGACATGATAAAGTGCATCTGGCTGCTGTTCTCCACATTATATATT
CAAGATACAGGCGCTTCAGATAAATGGTGCAAAGCTGACCTGTGCCGAGG
ACAACACGTGCTCTGCGATGACAATGGAAATTTTGAATCCACTTGTCCCA
AACAAGCCGCAGCCATGGTGAAAATGAGCTGGGATATGATAGCCCTCATC
GTGGACAAGCACAATGAATATCGCAACAAGTTCGCCGGCGGAATGGATCA
GAATCCGAAGGCGGCAAGGATGACCACGATCGAATGGGATCCGGAACTGG
CCAAAGTGGCCGACGGTCTGGTACGTCGTTGTGAGCCAATCCGAGATCAG
TGCGCCATAACCCCAAATTACGGTCATGCGGAAGTCAGCTATTCGCTGGA
AAAGTACTTCTGCATGACCACGAAAAAGGAGGCCCTGAGGAAGCAACTCG
ATCACTGGTTTGACCCCAATAGTAAAGATGAAGTGCAGAAGCTGTTCTTC
TCATGGACTAAAAATCAGCAGGAACTGTCCAAAAACTACTTTCAGGTATT
GAGGGATCGAGCTAATCGCGTGGGCTGCGCCATAGTTGAGTATGTTCGGC
CAGCACTGGTCCACCAGTTGCTAAAGTGCGTCTACAACTGCGGAGTGAGT
CTCTGTGAGGAGGAGGATAATCCCGTCTACGAGGACACCGACGAAGAAGC
CGCTTCAGAGTGCATGAAGGGAAGCAATAAGCAATACAAGAATCTTTGCC
ACAAAGATGAGCTCGTGAAGACCTGCAATGGTGGCTCACTTTTCGTCGAA
CCTGAAAATGATTATAACGATGGTCAAGAAGAGAATATGGAAAACGATTA
TGATTTCGAGACCACCGTGTTCACACTTCCAACGTACGATCCAAACGATG
TGTTGCCAACGCTACCAGACACCCAGATTTAAATTTCAATACAATAGTAC
GACGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGTGTCAT
ATCATATCATATCATATTCATATCACACTAGCTAGAGATCTGTCATGACT
AGTGCTGATCTCACAATAAAAACGCCGGGCGCAACCGAACGTCTGAACAT
CAATGAATTGAGTCATACTG
UFO07044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10651-RB | 1061 | CG10651-RB | 22..963 | 8..948 | 4670 | 99.8 | Plus |
| CG10651-RA | 1011 | CG10651-RA | 22..963 | 8..948 | 4670 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20133853..20134281 | 948..521 | 2080 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20134331..20134723 | 521..129 | 1965 | 100 | Minus |
| 2L | 23513712 | 2L | 20134782..20134902 | 128..8 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:52 has no hits.
UFO07044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:08 Download gff for
UFO07044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 1..941 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:39 Download gff for
UFO07044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 17..963 | 1..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:53 Download gff for
UFO07044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10651-RA | 17..963 | 1..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:53 Download gff for
UFO07044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20134782..20134906 | 1..128 | 96 | | Minus |
| 2L | 20133853..20134281 | 521..948 | 99 | <- | Minus |
| 2L | 20134332..20134723 | 129..520 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:39 Download gff for
UFO07044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20133853..20134281 | 521..948 | 99 | <- | Minus |
| arm_2L | 20134332..20134723 | 129..520 | 100 | <- | Minus |
| arm_2L | 20134782..20134906 | 1..128 | 96 | | Minus |
