UFO07048.5prime Sequence
1116 bp (1012 high quality bases) assembled on 2009-09-15
> UFO07048.5prime
CAGTCGACATGTATAGATCACACATCGCTGTCATTTGTGCCTTCGTGGGC
ATATTCGTGGGGACAGTTGTCCAGTCTGCTCCTTTTTCCAATGATCCTGC
AGAGGTCCCAAACTTCTATGAATTGTTCAATAATCCCGATGCACACTTAT
CCTTGACCAATGGTCCCGACACGATCCATTTCATCGAGGAACATGGTTAT
CCAGTTGAGCGACACTATGTGACCACTGAAGATGGCTACATTATCAGCCT
CTTCCGAATTCCATACTCGCACAATATCCAAAACCAGCAAGAAAAGAGGC
CCATTGCTTTCATTCAACACGGTCTTTTTGCCAGCTCCGACTTTTGGCCA
AGCTTGGGACCGGATGATGGACTTCCTTTCCTGCTCTCCGATGCTGGATA
CGATGTTTGGCTGGGCAATGCTCGTGGAAACAGATACTCGAAAAACCATA
CCTCTCGTCTGACAAGTCATCCGGACTTCTGGCGCTTCAGTTGGCACGAG
ATTGGATACTTTGATATTGCCGCAGCTATTGACTATACCCTGTCCACGGA
GAACGGACAGGATCAGAAGGGTATCCACTACATAGGACACTCCCAAGGCA
CCACGGTTATGTTTGTGCTGCTGTCCTCAAGACCGGAATATAACGACAAG
ATCAAGACGGCTCACATGCTGGCTCCTGTGGCATTTATGGATCACATGGA
CGATGTTATGGTCAACACCTTGTCTCCTTACCTCGGTTTTAACAATATCT
ACTCGACCCTCTTCTGTTCTCAAGAATTCTTGCCCCACAACGATTTCGTC
CTGGCTCTGATGTACAGTGTTTGTCTTCCGGAATCGATTGTTTACAGCTT
TTGCAGCAGCAGTAATGAAACAACTACTGAGGAAGGAAGAACTAATTCGA
CCGCCTCTGCGTTGACTTCTGGAGTGATGCCTGCTGTGTTTCACGGATCA
AATCCTGCACTACATGCAGAGCATCATCGGACATTTCGCAGTTCGATTTG
GCACAAAAGAATATGAGTCTTATGGACGAGCCCAGAGATACCCACTGACT
ATCACGCTGAAATGCATCTGTGATTCGGACGCGATGAATGGCCGAATTAG
AGTTTCTTGAGGGTGC
UFO07048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31091-RC | 2149 | CG31091-RC | 692..1802 | 9..1094 | 4920 | 97.5 | Plus |
| CG31091-RB | 1497 | CG31091-RB | 40..1150 | 9..1094 | 4920 | 97.5 | Plus |
| mag-RA | 1477 | CG5932-RA | 324..384 | 380..440 | 185 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25900813..25901539 | 173..899 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 25900594..25900758 | 9..173 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 25901605..25901677 | 899..969 | 265 | 97.3 | Plus |
| 3L | 28110227 | 3L | 20461006..20461066 | 380..440 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:58 has no hits.
UFO07048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:14 Download gff for
UFO07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RA | 682..1720 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:22 Download gff for
UFO07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 30..1068 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:27 Download gff for
UFO07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 30..1068 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:27 Download gff for
UFO07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25900584..25900758 | 1..173 | 97 | -> | Plus |
| 3R | 25900814..25901539 | 174..899 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:22 Download gff for
UFO07048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21726306..21726480 | 1..173 | 97 | -> | Plus |
| arm_3R | 21726536..21727261 | 174..899 | 100 | -> | Plus |
