UFO07052.5prime Sequence
1130 bp (1028 high quality bases) assembled on 2009-09-15
> UFO07052.5prime
CAGTCGACATGTCCAAGCCAGTACCAATGAGTCCGTCCTTTGTGGACGAG
GATCTGCACAACCTGAGGAAGCCCAAACCGTTCAAATTGGGCCAGTTCTT
ATATAACACCGAGGATGGAACGGTTATGGGTCGCGATCGATCGTCATGGG
CCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCCCTC
GTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCATTCC
CAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAGGTT
TTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGGTAC
AAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGATGA
TTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTCAGA
ACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTGTGC
GACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTACAG
CTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCTACG
GCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAACATG
CCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCCAGA
AAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCGACC
AGGAGAACATTGGTGCTGTCAACTACCTGCCAATCACGGGATTCCCCGGC
TACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCCTGGTGGC
GGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAACGTGAGTGCAG
GCTTGGCTCGCACATCATACACGATCGCAAGAGAGATCGGATCGTGCACT
ATGAGCTCTCATGATGCAAGCTTTCTAGACATCGTTTGGCGCGCGGGCCC
AGGTAGTGTCATAATCATATCATATCATATCATATCACACTAGCCTAGGA
ATCTGTCATGACTAGTGCTGATTCTCACCAATAAACGGCGCGCACGAACG
TCCGAACATCCGATGATCTGAGGCATACTG
UFO07052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RE | 1949 | CG9261-RE | 110..1068 | 7..958 | 4605 | 99.2 | Plus |
| nrv2-RA | 1980 | CG9261-RA | 141..1099 | 7..958 | 4605 | 99.2 | Plus |
| nrv2-RD | 2156 | CG9261-RD | 317..1275 | 7..958 | 4605 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6791031..6791328 | 704..407 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6790798..6790969 | 874..703 | 845 | 99.4 | Minus |
| 2L | 23513712 | 2L | 6791699..6791842 | 293..150 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6793228..6793371 | 150..7 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6791518..6791640 | 411..289 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 252..199 | 117 | 68.5 | Minus |
UFO07052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:05 Download gff for
UFO07052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RE | 106..1076 | 7..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:37 Download gff for
UFO07052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 312..1287 | 1..969 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:20 Download gff for
UFO07052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RD | 312..1287 | 1..969 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:20 Download gff for
UFO07052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6793228..6793375 | 1..150 | 97 | | Minus |
| 2L | 6791031..6791323 | 412..704 | 100 | <- | Minus |
| 2L | 6791518..6791637 | 292..411 | 100 | <- | Minus |
| 2L | 6790799..6790967 | 705..873 | 99 | <- | Minus |
| 2L | 6791701..6791841 | 151..291 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:37 Download gff for
UFO07052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6790799..6790967 | 705..873 | 99 | <- | Minus |
| arm_2L | 6791031..6791323 | 412..704 | 100 | <- | Minus |
| arm_2L | 6791518..6791637 | 292..411 | 100 | <- | Minus |
| arm_2L | 6791701..6791841 | 151..291 | 100 | <- | Minus |
| arm_2L | 6793228..6793375 | 1..150 | 97 | | Minus |
