UFO07053.5prime Sequence
1089 bp (984 high quality bases) assembled on 2009-09-15
> UFO07053.5prime
CAGTCGACATGCCAGCAACGATGTTTGATTCCCAGCTGAGTTTGTGCGCG
GGTCGCATTGTCGCCGATTCCACCACCACCACTACCTCCGGCATGGATGG
ATGCGATGGTGCCAAGACGATGATATGCCGCGCTTGTCTTGTGCTACTGG
GTCCGCAGGATGCGTGTCACAATCTGGACAGCGAACAGGATCTGGCCAGC
AAGTACTACGGCTGTACTGGAGAGGATGCCGTTAGGGATTTGCCACCCCA
GTTGGTGCTGAAAAGCATCTGCGAGTGCTGCTATCAGTTGGTGCAAAAGT
TCCACGACTTTCAACGCATGTGCGCAGAGTCCTTGCGCAATTTTGAGAAG
CTGCTGCAGGACATCGACATCGGATGCCACAAACTGGAGGACCACACTTG
GCACGACTTGGACACCCCCTCGGAGAGCAACGAGTCCACTAATCCGGAAG
CCCAGTCGCACGCACCCTGCATCGCAGCGACGCAGGAGATTGAGGAAGTC
TACGTAATAGAGGACGAGTCAGCCAAACAGGATCTGGGCCAGGAGAAGCT
ATCCATTTCTAGCAAGTTGCTGGGTGCCAGAAAACGACGAGGAGTGCGAC
ACACCCTCGAGTGCCGAATTTGCCACCGTGGCTTCTACAAACCGTCGCTG
CTGGAGGCCCATATGCAGCAGCATGAGGGTCTGAGACCGTATACCTGCGT
CCATTGTGCCAAGAGCTATGCCCGGGCCAATCTGCTGGAGTCGCACCTGC
GGCAGATGCATAACAATGCCGACGCTGCGCGGATCATCTATGCCTGTCCG
AGCTGCAACAAGGTGTACACAGCGAACCGAAGTCTCAAATATCACATGAG
AAGGACGCACGAAGGTATCACGAGTCAGAGTCCCCGGATGCGCGGCACAT
TTGTGAGAGTGTGGCAAGTGCTTTGCGCGAAAGGCACATCTACGCGCACA
GATGTCCATGTAGCGTTGAGGTCGAGATACTGCTGCATGCTGCGATCGCA
AATCTACCCAGAAAACATGTGATCATCTGCTGCCAAGGCCGCAATAGAAT
CTGCTGCTCGATGCGAAATGCGACGCATTCGACGGCGTG
UFO07053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10654-RA | 1337 | CG10654-RA | 131..1225 | 9..1079 | 4835 | 97.4 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 131..614 | 9..492 | 2420 | 100 | Plus |
| CG10654-RB | 1805 | CG10654-RB | 692..1303 | 492..1079 | 2420 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12507227..12507710 | 492..9 | 2420 | 100 | Minus |
| 3L | 28110227 | 3L | 12506035..12506487 | 942..492 | 2165 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:14 has no hits.
UFO07053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:04 Download gff for
UFO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 1..1095 | 9..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:22 Download gff for
UFO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 122..1225 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:41 Download gff for
UFO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10654-RA | 122..1225 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:41 Download gff for
UFO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12505876..12506487 | 492..1079 | 95 | <- | Minus |
| 3L | 12507228..12507715 | 1..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:22 Download gff for
UFO07053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12498976..12499587 | 492..1079 | 95 | <- | Minus |
| arm_3L | 12500328..12500815 | 1..491 | 99 | | Minus |
