UFO07055.5prime Sequence
1133 bp (1023 high quality bases) assembled on 2009-09-15
> UFO07055.5prime
CAGTCGACATGACTCTGCAATGTAATAATAATAATAATTTCGCTTGCTTT
TTAGGTCCCAACATGACTGCAGCGCCATACAACTACAACTATATCTTTAA
ATACATCATCATTGGTGACATGGGCGTGGGCAAGTCCTGCCTGCTCCACC
AGTTCACCGAGAAGAAATTCATGGCCAATTGTCCTCACACCATTGGCGTG
GAGTTCGGCACACGCATCATTGAGGTGGACGACAAAAAGATCAAGCTACA
GATCTGGGACACAGCGGGTCAGGAGCGATTCAGGGCAGTGACACGCTCCT
ATTACCGTGGAGCAGCTGGTGCGCTGATGGTCTACGATATTACCAGGCGC
TCCACGTACAATCACCTGAGCAGCTGGCTTACCGACACTCGCAATCTCAC
CAATCCCAGCACTGTGATCTTTCTCATTGGCAACAAATCGGATCTGGAGA
GCACTCGGGAGGTTACCTACGAGGAGGCCAAGGAGTTTGCCGACGAGAAC
GGCCTAATGTTTCTCGAAGCGAGCGCTATGACTGGCCAGAATGTGGAGGA
GGCTTTTCTGGAGACCGCACGCAAGATTTACCAGAACATCCAGGAGGGTC
GGCTCGATCTGAACGCCTCCGAGTCCGGAGTTCAGCACAGGCCATCGCAG
CCGTCGCGAACTTCGCTGAGTAGCGAGGCTACGGGCGCCAAGGATCAGTG
CTCGTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCGACAT
GCAAGCATCACAAACGGCATGATGACTGATCGCAGCGCATCAGCACTTGT
CGCCTTGGCGTTTAATATTGCCATGGGTGAAACGGGGGGCGAAAAGTTGT
CAATTGTCACGTTAATTCGACTGTAACTCCCAG
UFO07055.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-RD | 878 | CG4212-RD | 15..713 | 9..707 | 3495 | 100 | Plus |
| Rab14-RA | 1147 | CG4212-RA | 329..982 | 54..707 | 3270 | 100 | Plus |
| Rab14-RB | 1468 | CG4212-RB | 232..884 | 55..707 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14357754..14357937 | 349..532 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 14357520..14357700 | 169..349 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 14358006..14358180 | 533..707 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 14357295..14357454 | 9..168 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 17573952..17574104 | 186..338 | 240 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:50 has no hits.
UFO07055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:02 Download gff for
UFO07055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RC | 10..717 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:15 Download gff for
UFO07055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 9..716 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:22 Download gff for
UFO07055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 9..716 | 1..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:22 Download gff for
UFO07055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14357289..14357454 | 1..168 | 97 | -> | Plus |
| 2L | 14357520..14357700 | 169..349 | 100 | -> | Plus |
| 2L | 14357755..14357937 | 350..532 | 100 | -> | Plus |
| 2L | 14358006..14358187 | 533..713 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:15 Download gff for
UFO07055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14357289..14357454 | 1..168 | 97 | -> | Plus |
| arm_2L | 14357520..14357700 | 169..349 | 100 | -> | Plus |
| arm_2L | 14357755..14357937 | 350..532 | 100 | -> | Plus |
| arm_2L | 14358006..14358187 | 533..713 | 97 | -> | Plus |
