UFO07057.5prime Sequence
1129 bp (1028 high quality bases) assembled on 2009-09-15
> UFO07057.5prime
CAGTCGACATGCAGCAGAGCACCGGAGCGGCGACGTCATCCGCAGCAGAT
AGCGGGATGGGGGCGACGGACCTGGTGTCCAGGTGCGTTGGCGACGGCGG
GGGAGGTGGCGGGAACAGCTGCTCCGGCGGATCCAGCGACCCAGCAGCGA
TCAACACAACGATTAGCTCCAAGCAGGCGGATGCGAGGGAGCCGCAGGAG
CAGCAGGTTGCCATCCACTACTTGGCTAGCTTCCATGAACTGTGCGTGGT
GACCGCCCTGCTGCCGCTGGTGACGCTCTTCACGTGCTTCGTGACCGCCT
ACGTCTTCCAGTACGACGATGTCCACGAGACACATTGCCGCGTCTACAAC
ATTATACCCTCGATAAGTGCAATTACCGGCGTCAGTCCGCAGCGCTACTT
CTGGCGCTTCAGCATCGCGCTCCACATCGGACCGCGAATCCCCATCGCCT
TTGTCTACAAGAACTACTACCGCTCGCAGCTGCGTCGGATCAGTCCCGCC
CAGGTGCCTCAGACGAGCCTGCTCATCACGCTGATCCTGGTGCTCAATTG
CATCGAGATCGCGTCCCTGGGCGGCGTCACCTATATATCGAATCGCGAGA
ACTACCCCGTTCACGAGCGCATATTCATCACGTTCATGGTCTGCTCGCTG
TGTTACATGCTGGCCACCATCAAGCTGAACGGCATCCTCAATGCCGGACA
GGCACTGAGCGAAAAGCAGCTCCTCTCCATCAAGTGGAAGAAGATCCTGT
TCGCCGTCTCCATCCTGAGCACCGTCGGCCTGCTGGTGTTCTTTGCCAAA
CATCGCTTCTACTGTCACGACTTGGCATTCAGTTGGTTCGCGTTCTTCGA
GTACTTGATCGCCATTGCCAACATGCTTTTCCACTTCACCATCATCTGGG
ACTTCCCATCGCAGTTCATGATGATCGTGCAGGACCCCGCGAGATCTTGC
CCAGTATTTGAGCACCGGCCGAAACTGACGCAGCTTTCTAGACCATTCGT
TTGGCCGCGCGGGCCCAGGTAGTGTCATATCATATCATATCATTATCATA
TCCAACTAGCTAGAGATCTGGTCATGACTATGCTGGAATTCTCACAATAA
AACGCCGCGCCAATCGTTACGTTCGAACA
UFO07057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7990-RA | 3079 | CG7990-RA | 177..1148 | 9..977 | 4785 | 99.7 | Plus |
| CG7990-RC | 3138 | CG7990-RC | 376..1207 | 149..977 | 4085 | 99.6 | Plus |
| CG7990-RD | 954 | CG7990-RD | 376..710 | 9..343 | 1675 | 100 | Plus |
| CG7990-RC | 3138 | CG7990-RC | 177..317 | 9..149 | 705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19198517..19198781 | 606..342 | 1325 | 100 | Minus |
| X | 23542271 | X | 19198231..19198449 | 825..607 | 1095 | 100 | Minus |
| X | 23542271 | X | 19199271..19199465 | 343..149 | 975 | 100 | Minus |
| X | 23542271 | X | 19201464..19201604 | 149..9 | 705 | 100 | Minus |
| X | 23542271 | X | 19197989..19198144 | 977..825 | 630 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:51 has no hits.
UFO07057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:01 Download gff for
UFO07057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 168..1154 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:10 Download gff for
UFO07057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 168..1154 | 1..986 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:28 Download gff for
UFO07057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7990-RA | 171..1157 | 1..986 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:28 Download gff for
UFO07057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19198003..19198143 | 826..964 | 98 | <- | Minus |
| X | 19198231..19198449 | 607..825 | 100 | <- | Minus |
| X | 19198517..19198781 | 342..606 | 100 | <- | Minus |
| X | 19199273..19199464 | 150..341 | 100 | <- | Minus |
| X | 19201464..19201608 | 1..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:10 Download gff for
UFO07057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19092036..19092176 | 826..964 | 98 | <- | Minus |
| arm_X | 19092264..19092482 | 607..825 | 100 | <- | Minus |
| arm_X | 19095497..19095641 | 1..149 | 97 | | Minus |
| arm_X | 19092550..19092814 | 342..606 | 100 | <- | Minus |
| arm_X | 19093306..19093497 | 150..341 | 100 | <- | Minus |
