UFO07059.5prime Sequence
1109 bp (997 high quality bases) assembled on 2009-09-15
> UFO07059.5prime
CAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCT
CTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGA
CGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGG
CTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCT
ATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTA
CCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCGAGGGTGCTC
ATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCCGGAAATCGTCGTGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGT
GACACTATCCCATATCACAGCTCCACCGTCTTTCATGGCATACGAAATCG
ATGACATCATCAGCGGCAGGATGTGATAAGCGAAAAACTTGTGCTATTTT
CTTACGGTCTTAAAGCGTATATCAGCTGACCGGCTTGGTAAAGGTAGTGA
CACTGACTG
UFO07059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Ag3-RA | 543 | CG18779-RA | 60..375 | 8..323 | 1580 | 100 | Plus |
Lcp65Ag1-RA | 517 | CG10530-RA | 61..376 | 8..323 | 1565 | 99.7 | Plus |
Lcp65Ag2-RA | 543 | CG10534-RA | 61..375 | 8..322 | 1560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6130554..6130749 | 323..128 | 980 | 100 | Minus |
3L | 28110227 | 3L | 6134838..6135033 | 323..128 | 965 | 99.5 | Minus |
3L | 28110227 | 3L | 6133158..6133352 | 322..128 | 960 | 99.5 | Minus |
3L | 28110227 | 3L | 6130811..6130930 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6133414..6133533 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6135095..6135214 | 127..8 | 600 | 100 | Minus |
3L | 28110227 | 3L | 6137725..6137826 | 314..213 | 390 | 92.2 | Minus |
3L | 28110227 | 3L | 6145194..6145289 | 213..308 | 300 | 87.5 | Plus |
3L | 28110227 | 3L | 6147570..6147653 | 319..236 | 300 | 90.5 | Minus |
3L | 28110227 | 3L | 6150441..6150524 | 319..236 | 300 | 90.5 | Minus |
3L | 28110227 | 3L | 6136385..6136555 | 321..151 | 255 | 76.6 | Minus |
3L | 28110227 | 3L | 6136699..6136742 | 50..7 | 190 | 95.5 | Minus |
Blast to na_te.dros performed 2014-11-28 22:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 890..950 | 133 | 72.6 | Plus |
UFO07059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:08 Download gff for
UFO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag3-RA | 50..376 | 1..328 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:25 Download gff for
UFO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag3-RA | 53..379 | 1..328 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:43 Download gff for
UFO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ag3-RA | 53..379 | 1..328 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:43 Download gff for
UFO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6130554..6130749 | 128..323 | 100 | <- | Minus |
3L | 6130811..6130937 | 1..127 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:25 Download gff for
UFO07059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6123654..6123849 | 128..323 | 100 | <- | Minus |
arm_3L | 6123911..6124037 | 1..127 | 97 | | Minus |