Clone UFO07059 Report

Search the DGRC for UFO07059

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:70
Well:59
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptLcp65Ag3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07059.5prime Sequence

1109 bp (997 high quality bases) assembled on 2009-09-15

> UFO07059.5prime
CAGTCGACATGAAATTCCTGATTGTCTTCGTCGCCCTCTTCGCCGTGGCT
CTGGCTGCTCCTGCCGCTGAGGAACCCACAATCGTGCGCTCTGAATCCGA
CGTTGGACCCGAAAGCTTCAAATACGACTGGGAAACCTCCGATGGACAGG
CTGCTCAAGCTGTAGGTCAGCTGAACGACATTGGAACTGAGAACGAGGCT
ATCTCTGTGAGTGGATCCTACCGCTTCATTGCTGATGATGGCCAGACCTA
CCAAGTCAACTACATCGCCGATAAGAACGGATTCCAGCCCGAGGGTGCTC
ATCTGCCCGTTGCCCCCGTGGCAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCCGGAAATCGTCGTGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGT
GACACTATCCCATATCACAGCTCCACCGTCTTTCATGGCATACGAAATCG
ATGACATCATCAGCGGCAGGATGTGATAAGCGAAAAACTTGTGCTATTTT
CTTACGGTCTTAAAGCGTATATCAGCTGACCGGCTTGGTAAAGGTAGTGA
CACTGACTG

UFO07059.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Ag3-RA 543 CG18779-RA 60..375 8..323 1580 100 Plus
Lcp65Ag1-RA 517 CG10530-RA 61..376 8..323 1565 99.7 Plus
Lcp65Ag2-RA 543 CG10534-RA 61..375 8..322 1560 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6130554..6130749 323..128 980 100 Minus
3L 28110227 3L 6134838..6135033 323..128 965 99.5 Minus
3L 28110227 3L 6133158..6133352 322..128 960 99.5 Minus
3L 28110227 3L 6130811..6130930 127..8 600 100 Minus
3L 28110227 3L 6133414..6133533 127..8 600 100 Minus
3L 28110227 3L 6135095..6135214 127..8 600 100 Minus
3L 28110227 3L 6137725..6137826 314..213 390 92.2 Minus
3L 28110227 3L 6145194..6145289 213..308 300 87.5 Plus
3L 28110227 3L 6147570..6147653 319..236 300 90.5 Minus
3L 28110227 3L 6150441..6150524 319..236 300 90.5 Minus
3L 28110227 3L 6136385..6136555 321..151 255 76.6 Minus
3L 28110227 3L 6136699..6136742 50..7 190 95.5 Minus
Blast to na_te.dros performed 2014-11-28 22:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 230..290 890..950 133 72.6 Plus

UFO07059.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:08 Download gff for UFO07059.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 50..376 1..328 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:25 Download gff for UFO07059.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 53..379 1..328 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:43 Download gff for UFO07059.5prime
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ag3-RA 53..379 1..328 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:43 Download gff for UFO07059.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6130554..6130749 128..323 100 <- Minus
3L 6130811..6130937 1..127 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:25 Download gff for UFO07059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6123654..6123849 128..323 100 <- Minus
arm_3L 6123911..6124037 1..127 97   Minus