UFO07061.5prime Sequence
1078 bp (993 high quality bases) assembled on 2009-09-15
> UFO07061.5prime
CAGTCGACATGGATAACATTGACGAAGACCTGACCCCCGAGCAGATTGCC
GTTCTGCAGAAGGCATTCAACAGCTTCGACCACCAGAAGACCGGCAGTAT
CCCCACCGAAATGGTGGCCGATATCCTCCGTCTTATGGGTCAGCCCTTCG
ACAGGCAGATCCTTGACGAGCTGATCGACGAGGTCGATGAGGACAAATCC
GGTCGCCTGGAGTTCGAGGAGTTCGTCCAGCTGGCTGCCAAGTTCATCGT
AGAGGAGGATGATGAGGCCATGCAGAAGGAGCTGCGCGAGGCTTTCCGTC
TGTACGACAAGCAGGGCAATGGCTACATTCCCACCTCCTGCCTGAAGGAG
ATCCTCAAGGAACTGGACGACCAGCTGACCGAACAGGAGCTCGACATCAT
GATTGAGGAAATCGATTCCGACGGCTCTGGCACCGTTGATTTTGATGAAT
TCATGGAGATGATGACTGGCGAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
CTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACATATCTCATAAAC
CCTTTAGGAAATAGCAGTTTCACGTACACGCCACATCTGCGAATATATGT
GTAGACTGCGAATCGTCTGCATTCACTTCGAGCGATGAACGTTTCAGTTG
CTCATGGAACCGGTACCAGTTAACCTAT
UFO07061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC47D-RB | 791 | CG9073-RB | 55..519 | 9..473 | 2325 | 100 | Plus |
| TpnC47D-RA | 601 | CG9073-RA | 55..519 | 9..473 | 2325 | 100 | Plus |
| TpnC73F-RC | 1059 | CG7930-RC | 210..659 | 24..473 | 1515 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11274580..11274831 | 447..196 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 17047352..17047601 | 198..447 | 905 | 90.8 | Plus |
| 2R | 25286936 | 2R | 11274890..11275064 | 195..21 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 17046344..17046460 | 24..140 | 300 | 83.8 | Plus |
| 3L | 28110227 | 3L | 17046522..17046579 | 138..195 | 200 | 89.7 | Plus |
| 2L | 23513712 | 2L | 5218651..5218773 | 234..356 | 195 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:01 has no hits.
UFO07061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:33 Download gff for
UFO07061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC47D-RA | 60..539 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:04 Download gff for
UFO07061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC47D-RA | 55..534 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:05 Download gff for
UFO07061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC47D-RA | 55..534 | 9..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:05 Download gff for
UFO07061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11274117..11274142 | 448..473 | 100 | <- | Minus |
| 2R | 11274580..11274831 | 196..447 | 100 | <- | Minus |
| 2R | 11274890..11275068 | 17..195 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:04 Download gff for
UFO07061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7161622..7161647 | 448..473 | 100 | <- | Minus |
| arm_2R | 7162085..7162336 | 196..447 | 100 | <- | Minus |
| arm_2R | 7162395..7162573 | 17..195 | 98 | -> | Minus |
