UFO07062.5prime Sequence
1119 bp (993 high quality bases) assembled on 2009-09-15
> UFO07062.5prime
CAGTCGACATGAGTGCTATGTTGTTGATATCCTGCCTGACGCTGCTCGTC
TGTGTCCAGGCAGCGGTGACAGGGCCGGAAGCTCGATCCAGTGTGGACGC
CAAGGATCAGCAGCTGGCTACAGCGAGTGTTGGAATCCTCGACTCCGTGC
TTCGAGGAAAGAGCCGCCAGTCGCGGTGCGTGAGATGCTACGAGGATCGG
GATCGTGATAGGTACTACAGCGGATACTCCAGTCGAACGGGCGACGATAT
GCGAGGTAGTGCCTGGTACTACTCCGGCTACGATGATCGCAGCAGGGATC
GGGACTACGATCGCTACTACGATCGCTCCCGTTATTACGAAGATCGCTAT
ACTCCGAGAACATACGACCGCTATGAGGGTCGTGGCTATGATGATTATAG
AAGGGGATCTGCGTATGGAGGATCATACGATCGGGAACGCGGATATGGAT
ACGACAACCGGGATCGGTACTACAGTGGTGATCGCTACAGCGAGGGGTTA
TCCAGAGATCGCTACTACGATCGCTCGAGGACAAGCGGGTATGATCGTTA
TGATCCGTACGATCGCTACTACTCCAGGGGCCAGTCCGGTTTTGATAACT
CCGGACGAGGCTATTACTTTGCCACCGACGAGGATGAAAGCGACAGGAAT
CGAGGATATGGCTACTCCTACACTCGTCCCTCCTCCTCAATGAGCTCGCC
CTGCGGACGCATTTCCGGAAATTGTCCCTATGCCGGTGGCTCCAAGGTCA
CCTCACCCGCCATTGGCAGCGACAGTTCGCGAGTGGGAGGCCATACCAAT
GTCCTGGGATCGGATGGAGGTCCTGGCCAGTTGGAGTTATCTGGGTGATC
AGGAGAAGGTCGGTGGAAGCAGCAGTGGCAGCGGCGGTGGTAGCAGCAGC
AGCAGCAGCGGCAGTAGCAGCAGCAGCAGCTCAGCGCAGCGGCGGCAGTC
GGGAGAGGAGCGGGACGGGACAGAGCGGATGCAAGAGCTTGCCTCTTGTC
ACCCTTGTAGCTCTTCTATGTGACGACCACGTCCTCGCAGCTTTCTAGAA
CATTCGTTGCCGGCGGGCAGTTATTGCCATATCATAATCCTAATCTAACT
CATCACTAGCTAGGAATCT
UFO07062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12911-RA | 1597 | CG12911-RA | 171..1212 | 8..1036 | 4835 | 98.5 | Plus |
| CG12911-RC | 1571 | CG12911-RC | 171..1159 | 8..989 | 4735 | 99.1 | Plus |
| CG12911-RF | 1196 | CG12911-RF | 171..741 | 8..578 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10258970..10259451 | 26..507 | 2410 | 100 | Plus |
| 2R | 25286936 | 2R | 10260008..10260394 | 573..958 | 1795 | 98.7 | Plus |
| 2R | 25286936 | 2R | 10259514..10259586 | 506..578 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:12 has no hits.
UFO07062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:32 Download gff for
UFO07062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 165..1217 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:53 Download gff for
UFO07062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 168..1220 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:18 Download gff for
UFO07062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12911-RA | 168..1220 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:18 Download gff for
UFO07062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10258971..10259451 | 27..507 | 100 | -> | Plus |
| 2R | 10259516..10259585 | 508..577 | 100 | -> | Plus |
| 2R | 10260013..10260429 | 578..986 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:53 Download gff for
UFO07062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6146476..6146956 | 27..507 | 100 | -> | Plus |
| arm_2R | 6147021..6147090 | 508..577 | 100 | -> | Plus |
| arm_2R | 6147518..6147934 | 578..986 | 97 | -> | Plus |
