UFO07063.5prime Sequence
1127 bp (1000 high quality bases) assembled on 2009-09-15
> UFO07063.5prime
CAGTCGACATGGGAAAACTTACGCTTTACGGAATCGACGGTAGTCCTCCG
GTCCGTTCGGTGCTGCTCACGCTGAGAGCCTTGAATTTGGACTTCGACTA
CAAGATCGTCAATCTGATGGAGAAGGAGCACCTGAAGCCAGAGTTCCTCA
AGATCAATCCCCTGCACACCGTGCCCGCTCTGGATGATAATGGTTTCTAT
TTGGCCGACAGCCATGCTATTAACTCCTACCTGGTGAGCAAGTACGGCCG
GAATGATTCTCTATACCCCAAGGATCTGAAGAAGCGAGCCATTGTCGATC
AGCGTCTGCACTACGACTCCAGCGTGGTGACCTCGACAGGAAGGGCTATC
ACCTTTCCGCTCTTCTGGGAGAACAAGACGGAGATTCCACAGGCGAGGAT
CGATGCCCTGGAGGGTGTTTACAAGTCCCTCAATCTGTTTCTGGAGAATG
GCAATTATCTGGCCGGCGACAACCTGACCATTGCCGATTTCCACGTCATC
GCCGGCTTGACAGGATTTTTCGTGTTCCTGCCTGTAGATGCCACTAAGTA
TCCCGAGCTGGCTGCCTGGATCAAGCGCATCAAGGAGCTGCCATACTACG
AGGAAGCGAATGGCTCTCGTGCTGCCCAAATCATCGAGTTCATCAAGAGC
AAAAAGTTCACTATTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCTGCACTCATCGCAGTACTGTTGTATTCATTAGCATT
CTGCGACATGCAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAG
CACTGTCGCTTGCGTATATATTGCCATGTGAAACGGGGCGAGAGTGTCGA
ATGCCGTTATCAACTGGGAACTCACAGAATGGCTGAACGAAACCATTCCA
TACCGTTACGGATGCCAGGTTCCGGTA
UFO07063.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstE3-RA | 755 | CG17524-RA | 42..704 | 6..668 | 3300 | 99.8 | Plus |
| GstD1-RB | 843 | CG10045-RB | 200..257 | 126..183 | 185 | 87.9 | Plus |
| GstD1-RA | 825 | CG10045-RA | 182..239 | 126..183 | 185 | 87.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18400754..18401416 | 6..668 | 3300 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12368403..12368460 | 183..126 | 185 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:27 has no hits.
UFO07063.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:31 Download gff for
UFO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE3-RA | 31..709 | 1..677 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:19 Download gff for
UFO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE3-RA | 35..713 | 1..677 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:04 Download gff for
UFO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstE3-RA | 35..713 | 1..677 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:04 Download gff for
UFO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18400747..18401425 | 1..677 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:19 Download gff for
UFO07063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14288252..14288930 | 1..677 | 98 | == | Plus |
