UFO07067.5prime Sequence
1091 bp (978 high quality bases) assembled on 2009-09-15
> UFO07067.5prime
CAGTCGACATGGCACTGCAGCTGCAAATTGAGAAGCTCAAAGGTTTGGAC
AACTACAAGGCCTGGTCGATGACGGTGCGGGCGTATCTGGAGTCGGAGGA
ACTCTGGACGGTGGTGGAGAATGGTCCCGAGAACAACGAGGAGTCCCTGC
TAAAGGACAAGCGGGCCAAGTTCTTGATTCTCTGCCTGATCGAGACCAAG
TTGTGCCAATTCATGGTCAGCATCCGCACGGCTCGGGATCTGTGGAATTA
CTTGCGCACCCAGCATTCGCTGCGTGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACT
CCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAG
GTGACACTATCCCATATCACAGCTCACGTCTTTCATTGCATACGAATCGG
ATGAGCATCATCAGCGGGCAGATGTGATAAGCGATAAACTGTGCTTATTT
TTCTTACGTCTTTAACGCGTATATCAGCTGACGGTCTATAAAGTACTGAG
CACTGACTGATGCCTCGAATTCCTTACCATGCATGGATATC
UFO07067.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18598-RA | 360 | CG18598-RA | 30..296 | 9..275 | 1335 | 100 | Plus |
| CG12320-RB | 1666 | CG12320-RB | 1457..1591 | 143..9 | 675 | 100 | Minus |
| CG12320-RB | 1666 | CG12320-RB | 1260..1393 | 275..142 | 670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18251144..18251278 | 9..143 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 18251342..18251475 | 142..275 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:29 has no hits.
UFO07067.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:29 Download gff for
UFO07067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18598-RA | 24..302 | 1..280 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:33 Download gff for
UFO07067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18598-RA | 24..302 | 1..280 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:50 Download gff for
UFO07067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18598-RA | 23..301 | 1..280 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:50 Download gff for
UFO07067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18251137..18251278 | 1..143 | 97 | -> | Plus |
| 3R | 18251344..18251479 | 144..280 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:33 Download gff for
UFO07067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14076859..14077000 | 1..143 | 97 | -> | Plus |
| arm_3R | 14077066..14077201 | 144..280 | 97 | -> | Plus |
