UFO07068.5prime Sequence
1119 bp (1023 high quality bases) assembled on 2009-09-15
> UFO07068.5prime
CAGTCGACATGGAAGGCCAACGCGTGGCAGTCGTCGCATTTGCTGTTTTG
CTCGCCGGATTGTGCGTGCTATCCGGTCTGAATGCGGCACCCGTGGAATG
CAATAATGGCGGTGGCATCCAGATCTCTGACGATGGTTTCCAGAGCCAGA
CGCAAACCGGTCCCGGCTGCCAGACCCAGACCTCCGAGGATGGAACCCAG
AGCCAAAGCCAGAGTCAGTCGGGCAATGGCTACCAATCGCAGACGCAGTG
CAGCGGCTCATCCTGTGGTCAGTTCAACACCTTCCCGCCGCTATTCACCA
TTAAGCCGCTGGAGCCATTGGCACCCATCACTTGGCAGCCATGGGGGCAA
ATGAGGAACAACCAGGTGCAGCAGCAGGTCAATTTTGGCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTACACGCCACATCTGCGAATATATGTGTAGAACTGCGGAAATCGTCG
TGTATCACTCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAACGGTGT
ACAGGTGACACTATCCCATATCACAGCTCCACGTCTTTCATGCATACGAA
GTAGATGACATCATCAGCGCAGATGTATAGCGAATAACTGGCTATTCGTA
CGCTTGAAGCGTAAATACA
UFO07068.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5773-RC | 1285 | CG5773-RC | 83..465 | 7..389 | 1915 | 100 | Plus |
| CG5773-RB | 514 | CG5773-RB | 83..465 | 7..389 | 1915 | 100 | Plus |
| CG5773-RA | 586 | CG5773-RA | 155..537 | 7..389 | 1915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18043116..18043421 | 389..84 | 1530 | 100 | Minus |
| 2R | 25286936 | 2R | 18043513..18043590 | 84..7 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:30 has no hits.
UFO07068.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:23:28 Download gff for
UFO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5773-RA | 149..548 | 1..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:00 Download gff for
UFO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5773-RA | 149..548 | 1..403 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:59 Download gff for
UFO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5773-RA | 149..548 | 1..403 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:59 Download gff for
UFO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18043116..18043421 | 84..389 | 100 | <- | Minus |
| 2R | 18043514..18043596 | 1..83 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:00 Download gff for
UFO07068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13931019..13931101 | 1..83 | 97 | | Minus |
| arm_2R | 13930621..13930926 | 84..389 | 100 | <- | Minus |
