UFO07070.5prime Sequence
1104 bp (986 high quality bases) assembled on 2009-09-15
> UFO07070.5prime
CAGTCGACATGTTCAAGTTCGTGTGCCTTTTTGCGCTGATTGCCTCCACG
GCGGCGGCTACCTCGGAAGCGGACAGCTTGCTGACCAGCGCTTTGAAGAT
GGTCAAGGACTGTGGCGAACGGTCCATGGTCTTGTGCATGAAGGAGCGAG
CCCTGCACTACTTCGATGCCGAGAACGGGGATGTGCGGCTCACCGAGGGC
ATTGCCCTGGTCAAGACCGATGAGATCCCGGTGGGTCGATCCCTCAACGA
GATGCAACTGCCCGAGGAGGTTGAGGCCCGGGAGGCCGAGGTGGACTCCC
TGCTGGTGGAGCGCGTTGCCCGCTTCTTCGGCACCCACACGCTGCAGTTC
AAGGTGCCCAAAGACTCCATCCAGGACATGCAGCGCGCCCTCGAGGAATC
TCGCGGCAAGAAGAAGGAGAAGAAGAAGTACCTGATGCCCCTGCTAATGC
TCTTCAAGCTGAAGATGGCCGCCCTGCTGCCCCTGGCCATTGGCTTCCTG
GCCCTGATCTCCTTCAAGGCCCTGGTCATCGGCAAGATCGCCCTGCTGCT
CTCCGGCATCATTGGGCTGAAGAAACTGCTCGAGTCGAAGAAGGAGAACT
ACGAGGTCGTTGCGCACCCGCACTACGAGCACGAGCACAGCTACGGCCGC
TCGCTGCCATCTGATGACTCCCAGGCCCAGCAGCTGGCCTATGCGGCGTA
TAAGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGCATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTGTATCATAGCATCTGCGAACATGGA
AGCATCCAACGCATGATGACTGATCGCAGCGCATCAGCACCTGTCGCTTG
GCGTATATATTGGCATGGTGAAACCGGGGCGAAAGTGTCATTGCCAGTAA
TCCA
UFO07070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi9-RA | 1360 | CG15592-RA | 202..901 | 8..707 | 3500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6261339..6261646 | 400..707 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 6260607..6260865 | 141..399 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 6260412..6260548 | 8..144 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:51 has no hits.
UFO07070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:20:00 Download gff for
UFO07070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi9-RA | 193..905 | 1..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:50 Download gff for
UFO07070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi9-RA | 195..907 | 1..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:09 Download gff for
UFO07070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi9-RA | 195..907 | 1..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:09 Download gff for
UFO07070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6260405..6260547 | 1..143 | 97 | -> | Plus |
| 3R | 6260610..6260865 | 144..399 | 100 | -> | Plus |
| 3R | 6261339..6261652 | 400..714 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:50 Download gff for
UFO07070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2086127..2086269 | 1..143 | 97 | -> | Plus |
| arm_3R | 2086332..2086587 | 144..399 | 100 | -> | Plus |
| arm_3R | 2087061..2087374 | 400..714 | 99 | == | Plus |
